Planaria EST Database

DrC_00504

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00504
         (882 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02465|CO1A2_BOVIN  Collagen alpha 2(I) chain precursor        101   3e-21
sp|O46392|CO1A2_CANFA  Collagen alpha 2(I) chain precursor        100   9e-21
sp|O42350|CO1A2_RANCA  Collagen alpha 2(I) chain precursor        100   9e-21
sp|Q01149|CO1A2_MOUSE  Collagen alpha 2(I) chain precursor         99   2e-20
sp|P02467|CO1A2_CHICK  Collagen alpha 2(I) chain precursor         99   2e-20
sp|Q28668|CO1A2_RABIT  Collagen alpha 2(I) chain precursor         98   3e-20
sp|O93484|CO1A2_ONCMY  Collagen alpha 2(I) chain precursor         97   5e-20
sp|P05997|CO5A2_HUMAN  Collagen alpha 2(V) chain precursor         96   2e-19
sp|P28481|CO2A1_MOUSE  Collagen alpha 1(II) chain precursor ...    95   2e-19
sp|P02466|CO1A2_RAT  Collagen alpha 2(I) chain precursor           94   5e-19

>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
          Length = 1364

 Score =  101 bits (251), Expect = 3e-21
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 19/221 (8%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + +L P+GS+  P RTCR L    P    G Y+IDPN G   DA +VYC  +T +TCI+A
Sbjct: 1145 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 1204

Query: 422  KSPTVPSRS-YHSLSSDNYKFLSYLTN-SSRLQYNIE-------RAQLNHLKMHSRFGHQ 574
            +   +P ++ Y +  +  + ++    N  ++ +YN+E         QL  +++ +    Q
Sbjct: 1205 QPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQ 1264

Query: 575  IILFKC-SGIKIISE----TENSVILISDND-KILRYKNSIFSYKVNQDNCYSANG---Y 727
             I + C + I  + E     + +VIL   ND +++   NS F+Y V  D C         
Sbjct: 1265 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQK 1324

Query: 728  TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            T +E KT K  R+PI DI   D+G  +Q +I  +IG VCF+
Sbjct: 1325 TIIEYKTNKPSRLPILDIAPLDIGGADQ-EIRLNIGPVCFK 1364

>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
          Length = 1366

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 19/221 (8%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + +L P+GS+  P RTCR L    P    G Y+IDPN G   DA +VYC  +T +TCI+A
Sbjct: 1147 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 1206

Query: 422  KSPTVPSRS-YHSLSSDNYKFLSYLTN-SSRLQYNIE-------RAQLNHLKMHSRFGHQ 574
            +   +P+++ Y +     + +L    N  ++ +YN+E         QL  +++ +    Q
Sbjct: 1207 QPENIPAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQ 1266

Query: 575  IILFKC-SGIKIISE----TENSVILISDND-KILRYKNSIFSYKVNQDNCYSANG---Y 727
             I + C + I  + E     + +VIL   ND +++   NS F+Y V  D C         
Sbjct: 1267 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1326

Query: 728  TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            T +E KT K  R+PI DI   D+G  +Q +    +G VCF+
Sbjct: 1327 TIIEYKTNKPSRLPILDIAPLDIGDADQ-EFRVDVGPVCFK 1366

>sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor
          Length = 1355

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 21/223 (9%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + IL P+GS+  P RTCR L    P    G Y+IDPN G   DA  V+C  ++ +TCI A
Sbjct: 1134 EVILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDAIRVFCDFSSGETCIHA 1193

Query: 422  KSPTVPSRSYHSLSSDNYK----FLSYLTNSSRLQYNIE-------RAQLNHLKMHSRFG 568
                +  ++++  +S+  K    F   L   ++ +Y+ E         QL  +++ +   
Sbjct: 1194 NPDEITQKNWYINTSNKDKKHLWFGEILNGGTQFEYHDEGLTAKDMATQLAFMRLLANQA 1253

Query: 569  HQIILFKC-SGIKIISE----TENSVILISDNDKILRYK-NSIFSYKVNQDNCYSAN--- 721
             Q I + C + I  + E     + +VIL   ND  LR + N+ F+Y V +D C       
Sbjct: 1254 SQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELRAEGNTRFTYSVLEDGCTKHTGEW 1313

Query: 722  GYTELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            G T +E +T K  R+PI DI   D+G  +Q +I F IG VCF+
Sbjct: 1314 GKTVIEYRTNKPSRLPILDIAPLDIGGHDQ-EIGFEIGPVCFK 1355

>sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor
          Length = 1372

 Score = 99.0 bits (245), Expect = 2e-20
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + +L P+GS+  P RTCR L    P      Y+IDPN G   DA +VYC  +T +TCI+A
Sbjct: 1153 ETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQA 1212

Query: 422  KSPTVPSR-SYHSLSSDNYKFLSYLTN-SSRLQYNIE-------RAQLNHLKMHSRFGHQ 574
            +    P++ SY    ++ + +L    N  S+ +YN+E         QL  +++ +    Q
Sbjct: 1213 QPVNTPAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQLAFMRLLANRASQ 1272

Query: 575  IILFKC-SGIKIISETENS----VILISDND-KILRYKNSIFSYKVNQDNCYSAN---GY 727
             I + C + I  + E   S    V+L   ND +++   NS F+Y V  D C       G 
Sbjct: 1273 NITYHCKNSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLVDGCSKKTNEWGK 1332

Query: 728  TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            T +E KT K  R+P  DI   D+G  +Q +    +G VCF+
Sbjct: 1333 TIIEYKTNKPSRLPFLDIAPLDIGGADQ-EFRVEVGPVCFK 1372

>sp|P02467|CO1A2_CHICK Collagen alpha 2(I) chain precursor
          Length = 1362

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 21/223 (9%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + +L P+GSK  P RTCR L    P    G Y+IDPN G   DA   YC   T +TCI A
Sbjct: 1141 ETLLTPEGSKKNPARTCRDLRLSHPEWSSGFYWIDPNQGCTADAIRAYCDFATGETCIHA 1200

Query: 422  KSPTVPSRSYHSLSSDNYK----FLSYLTNSSRLQYNIE-------RAQLNHLKMHSRFG 568
                +P+++++   +   K    F   +   ++ +YN E         QL  +++ +   
Sbjct: 1201 SLEDIPTKTWYVSKNPKDKKHIWFGETINGGTQFEYNGEGVTTKDMATQLAFMRLLANHA 1260

Query: 569  HQIILFKC-SGIKIISE----TENSVILISDNDKILRYK-NSIFSYKVNQDNCYSAN--- 721
             Q I + C + I  + E     + +VIL   ND  LR + NS F++ V  D C   N   
Sbjct: 1261 SQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELRAEGNSRFTFSVLVDGCSKKNNKW 1320

Query: 722  GYTELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            G T +E +T K  R+PI DI   D+G  +Q +    IG VCF+
Sbjct: 1321 GKTIIEYRTNKPSRLPILDIAPLDIGGADQ-EFGLHIGPVCFK 1362

>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
          Length = 526

 Score = 97.8 bits (242), Expect = 3e-20
 Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
 Frame = +2

Query: 242 DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
           + +L P+GS+  P RTCR L    P    G Y+IDPN G   DA +VYC  +T +TCI+A
Sbjct: 307 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 366

Query: 422 KSPTVPSRS-YHSLSSDNYKFLSYLTN-SSRLQYNIE-------RAQLNHLKMHSRFGHQ 574
           +   +  ++ Y S  +  + +L    N  ++ +YN+E         QL  +++ +    Q
Sbjct: 367 QPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMATQLAFMRLLANHASQ 426

Query: 575 IILFKCSGIKIISETE-----NSVILISDND-KILRYKNSIFSYKVNQDNCYSAN---GY 727
            I + C       + E      +VIL   ND +++   NS F+Y V  D C       G 
Sbjct: 427 NITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCTKKTNEWGK 486

Query: 728 TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
           T +E KT K  R+P  DI   D+G  +Q +    +G VCF+
Sbjct: 487 TIIEYKTNKPSRLPFLDIAPLDIGGADQ-EFYVDVGPVCFK 526

>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
          Length = 1356

 Score = 97.4 bits (241), Expect = 5e-20
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 20/226 (8%)
 Frame = +2

Query: 230  NFGADAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQT 409
            N   + +L P+GSK  P RTCR +    P    G Y+IDPN G I DA + YC  +T  T
Sbjct: 1133 NSQIENLLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADAIKAYCDFSTGHT 1192

Query: 410  CIKAKSPTVPSRSYHSLSSDNYK---FLSYLTNSSRLQYNIE-------RAQLNHLKMHS 559
            CI     ++  ++++  SS+N K   F   +   +   YN E         QL  +++ +
Sbjct: 1193 CIHPHPESIARKNWYR-SSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLA 1251

Query: 560  RFGHQIILFKCSGIKIISETEN-----SVILISDNDKILRYK-NSIFSYKVNQDNCYSAN 721
                Q I + C       + EN     +V+L   ND  LR + NS F++ V +D C    
Sbjct: 1252 NQATQNITYHCKNSVAYMDGENGNLKKAVLLQGSNDVELRAEGNSRFTFNVLEDGCTRHT 1311

Query: 722  GY---TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            G    T +E +T K  R+PI DI   D+G  +Q +    IG VCF+
Sbjct: 1312 GQWSKTVIEYRTNKPSRLPILDIAPLDIGEADQ-EFGLDIGPVCFK 1356

>sp|P05997|CO5A2_HUMAN Collagen alpha 2(V) chain precursor
          Length = 1496

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
 Frame = +2

Query: 257  PDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKAKSPTV 436
            PDGSK  P RTC  L     +   G Y+IDPN G+++DA +VYC + T +TCI A   +V
Sbjct: 1282 PDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMETGETCISANPSSV 1341

Query: 437  PSRSYHSLSSDNYKFLSY---LTNSSRLQY------NIERAQLNHLKMHSRFGHQIILFK 589
            P +++ +  S + K + Y   +   S+  Y      N    Q+  L++ S+   Q I + 
Sbjct: 1342 PRKTWWASKSPDNKPVWYGLDMNRGSQFAYGDHQSPNTAITQMTFLRLLSKEASQNITYI 1401

Query: 590  CSGI-----KIISETENSVILISDNDKILRYKNSI-FSYKVNQDNCYSAN---GYTELEI 742
            C              + +V+L   ND  ++ + +I F Y V QD C   N   G T  E 
Sbjct: 1402 CKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIVLQDTCSKRNGNVGKTVFEY 1461

Query: 743  KTKS-RRMPIRDIGLGDLGSLEQHKIEFSIGDVCF 844
            +T++  R+PI D+   D+G  +Q +    IG VCF
Sbjct: 1462 RTQNVARLPIIDLAPVDVGGTDQ-EFGVEIGPVCF 1495

>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
          Length = 1459

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 20/221 (9%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            ++I  PDGS+  P RTC+ L    P    G Y+IDPN G   DA +V+C + T +TC+  
Sbjct: 1239 ESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYP 1298

Query: 422  KSPTVPSRSYHSLSSDNYKFL----------SYLTNSSRLQYNIERAQLNHLKMHSRFGH 571
               TVP +++ S  S   K +           +      L  N    Q+  L++ S  G 
Sbjct: 1299 NPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSTEGS 1358

Query: 572  QIILFKC-SGIKIISET----ENSVILISDNDKILRYK-NSIFSYKVNQDNCYSAN---G 724
            Q I + C + I  + E     + ++++   ND  +R + NS F+Y   +D C       G
Sbjct: 1359 QNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWG 1418

Query: 725  YTELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCF 844
             T +E ++ K+ R+PI DI   D+G  EQ +    IG VCF
Sbjct: 1419 KTVIEYRSQKTSRLPIIDIAPMDIGGAEQ-EFGVDIGPVCF 1458

>sp|P02466|CO1A2_RAT Collagen alpha 2(I) chain precursor
          Length = 1372

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
 Frame = +2

Query: 242  DAILVPDGSKNLPGRTCRHLAEVIPSMLDGLYFIDPNGGTIDDAFEVYCKVNTKQTCIKA 421
            + +L P+GS+  P RTCR L    P      Y+IDPN G   DA +VYC  +T +TCI+A
Sbjct: 1153 ETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQA 1212

Query: 422  KSPTVPSRSYHSLSSDN-YKFLSYLTN-SSRLQYNIE-------RAQLNHLKMHSRFGHQ 574
            +    P+++ +S +  N + +L    N  S+ +YN E         QL  +++ +    Q
Sbjct: 1213 QPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQLAFMRLLANRASQ 1272

Query: 575  IILFKC-SGIKIISE----TENSVILISDND-KILRYKNSIFSYKVNQDNCYSANG---Y 727
             I + C + I  + E       +VIL   ND +++   NS F+Y V  D C         
Sbjct: 1273 NITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWDK 1332

Query: 728  TELEIKT-KSRRMPIRDIGLGDLGSLEQHKIEFSIGDVCFQ 847
            T +E KT K  R+P  DI   D+G   Q +    +G VCF+
Sbjct: 1333 TVIEYKTNKPSRLPFLDIAPLDIGGTNQ-EFRVEVGPVCFK 1372

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,665,792
Number of Sequences: 369166
Number of extensions: 1813607
Number of successful extensions: 5589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5562
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00504

  1. Dr_sW_013_E24
  2. Dr_sW_023_D08