Planarian EST Database

DrC_00500

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00500 ACTCAAAGAACAATACATTTATTTATGCTTTTTAACAAACTCCACAGGTTTTTCTGCAAA TCTTTTCGTACATTTTGTCGCAATCTCCTCTTTCTTTAAGGAAACCACAGTCTGGTCTGC TGTCAACACAGTCTCCACATAAATGACAAGATTTTTCGCATTTGCCATAGACATCTGGAC TGATACATTCTTCAGCAGTTTTAGAACCACAATCACTATCAACATCTGCACATTCTTCGT CACACATAACGAATGCAATTAAAGCAAAGAAAACAATAAAAGATTTCTAAATTTAAGTTT CATAATGGCAAGAACTAAACAAACCGCAAGAAAATCAACTGGTGGAAAAGCTCCAAGAAA ACAATTAGCTACTAAAGCTGCTAGAAAATCTGCACCATCTACTGGTGGTGTTAAGAAACC ACATAGATATCGTCCAGGAACTGTTGCTCTTAGAGAAATTAGAAGATATCAAAAAAGCAC TGAATTGTTGATCAGAAAATTACCTTTTCAACGATTAGTTCGAGAAATTGCACAAGATTT CAAAACTGATTTGAGATTTCAAAGTGCTGCTGTTGGTGCTTTACAAGAAGCAAGTGAAGC TTATTTAGTTGGTCTTTTTGAAGATACTAATCTATGCGCTATTCATGCCAAGCGTGTAAC CATTATGCCAAAAGATATCCAATTGGCAAGAAGAATTCGTGGAGAAAGAGCATGATTGTA CATTACTTACCTTATCATGTTTCTATTAAATGTAGTTAATGTTACTGATATCTATCTTAC TGTTATTTAATATATTGTAATTGTCTCTTTACTCTTAGAATTTGTACATTTGAATAAATT TAGTGAGTGACGTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00500
         (854 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q71LE2|H33_PIG  Histone H3.3 >gi|55977063|sp|P84244|H33_M...   264   2e-70
sp|Q10453|H33_CAEEL  Histone H3.3                                 263   5e-70
sp|Q8WSF1|H33_TRIPS  Histone H3.3                                 263   5e-70
sp|P02299|H3_DROME  Histone H3 >gi|55977060|sp|P84229|H31_CH...   259   9e-69
sp|P69079|H3_STRDR  Histone H3, embryonic >gi|59799549|sp|P6...   257   3e-68
sp|P68433|H31_MOUSE  Histone H3.1 >gi|55977056|sp|P68432|H31...   257   3e-68
sp|P84227|H32_BOVIN  Histone H3.2 >gi|55977048|sp|P84232|H3_...   257   3e-68
sp|P22843|H3_ACRFO  Histone H3                                    256   6e-68
sp|Q71T45|H3_EUPES  Histone H3 >gi|73919912|sp|Q6LCK1|H3_BRA...   256   6e-68
sp|P68428|H3_WHEAT  Histone H3 >gi|55977041|sp|P68427|H3_PEA...   256   6e-68

>sp|Q71LE2|H33_PIG Histone H3.3
 sp|P84244|H33_MOUSE Histone H3.3
 sp|P84250|H33_DROHY Histone H3.3 (H3.A/B)
 sp|P84248|H33_SPISO Histone H3.3
 sp|P84245|H33_RAT Histone H3.3
 sp|P84246|H33_RABIT Histone H3.3
 sp|P84243|H33_HUMAN Histone H3.3
 sp|P84249|H33_DROME Histone H3.3 (H3.A/B) (H3.3Q)
 sp|P84247|H33_CHICK Histone H3.3 (H3.3A/B) (Histone H3 class II)
          Length = 136

 Score =  264 bits (675), Expect = 2e-70
 Identities = 135/136 (99%), Positives = 136/136 (100%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|Q10453|H33_CAEEL Histone H3.3
          Length = 136

 Score =  263 bits (672), Expect = 5e-70
 Identities = 134/136 (98%), Positives = 136/136 (100%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|Q8WSF1|H33_TRIPS Histone H3.3
          Length = 136

 Score =  263 bits (672), Expect = 5e-70
 Identities = 134/136 (98%), Positives = 136/136 (100%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|P02299|H3_DROME Histone H3
 sp|P84229|H31_CHICK Histone H3 (Histone H3 class I)
 sp|P84239|H3_URECA Histone H3
 sp|P84237|H3_TIGCA Histone H3
 sp|P84235|H3_PLADU Histone H3
 sp|P84234|H3_ONCMY Histone H3
 sp|P84236|H3_DROHY Histone H3
 sp|P84238|H3_CHITH Histone H3 (H3)
 sp|P84230|H3_CAIMO Histone H3
 sp|P84233|H31_XENLA Histone H3.1
 sp|P84228|H32_MOUSE Histone H3.2
          Length = 136

 Score =  259 bits (661), Expect = 9e-69
 Identities = 133/136 (97%), Positives = 135/136 (99%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|P69079|H3_STRDR Histone H3, embryonic
 sp|P69078|H3_SOLST Histone H3, embryonic
 sp|P69077|H3_PYCHE Histone H3, embryonic
 sp|P69076|H3_PSAMI Histone H3, embryonic
 sp|P69075|H3_PISOC Histone H3, embryonic
 sp|P69074|H3_PISBR Histone H3, embryonic
 sp|P69073|H3_PARLI Histone H3, embryonic
 sp|P69072|H3_LYTPI Histone H3, embryonic
 sp|P69071|H3_DERIM Histone H3, embryonic
          Length = 136

 Score =  257 bits (657), Expect = 3e-68
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKT+LRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|P68433|H31_MOUSE Histone H3.1
 sp|P68432|H31_BOVIN Histone H3.1
 sp|P68431|H31_HUMAN Histone H3.1 (H3/a) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j)
           (H3/k) (H3/l)
          Length = 136

 Score =  257 bits (656), Expect = 3e-68
 Identities = 132/136 (97%), Positives = 134/136 (98%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|P84227|H32_BOVIN Histone H3.2
 sp|P84232|H3_PORAF Histone H3
 sp|P84231|H3_ICTBU Histone H3
          Length = 135

 Score =  257 bits (656), Expect = 3e-68
 Identities = 132/135 (97%), Positives = 134/135 (99%)
 Frame = +2

Query: 308 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 487
           ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60

Query: 488 LIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 667
           LIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIM
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 120

Query: 668 PKDIQLARRIRGERA 712
           PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135

>sp|P22843|H3_ACRFO Histone H3
          Length = 136

 Score =  256 bits (654), Expect = 6e-68
 Identities = 132/136 (97%), Positives = 134/136 (98%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAA KSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|Q71T45|H3_EUPES Histone H3
 sp|Q6LCK1|H3_BRANA Histone H3
 sp|Q6LBE3|H3_ASPOF Histone H3
 sp|Q53X03|H32_MAIZE Histone H3 type 2
 sp|P69248|H3_PETCR Histone H3
 sp|P59226|H3_ARATH Histone H3
 sp|P69247|H31_ORYSA Histone H3
 sp|P69246|H31_MAIZE Histone H3 type 1
          Length = 136

 Score =  256 bits (654), Expect = 6e-68
 Identities = 130/136 (95%), Positives = 135/136 (99%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

>sp|P68428|H3_WHEAT Histone H3
 sp|P68427|H3_PEA Histone H3
 sp|P68430|H3_ONOVI Histone H3
 sp|P68429|H31_MEDSA Histone H3.1 (Major histone H3)
          Length = 136

 Score =  256 bits (654), Expect = 6e-68
 Identities = 130/136 (95%), Positives = 135/136 (99%)
 Frame = +2

Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 665 MPKDIQLARRIRGERA 712
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,906,788
Number of Sequences: 369166
Number of extensions: 1429379
Number of successful extensions: 4933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00500

Planaria EST Database

DrC_00500

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail