Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_M11
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71LE2|H33_PIG Histone H3.3 >gi|55977063|sp|P84244|H33_M... 221 9e-58
sp|Q10453|H33_CAEEL Histone H3.3 219 2e-57
sp|Q8WSF1|H33_TRIPS Histone H3.3 219 2e-57
sp|P02299|H3_DROME Histone H3 >gi|55977060|sp|P84229|H31_CH... 215 4e-56
sp|P84227|H32_BOVIN Histone H3.2 >gi|55977048|sp|P84232|H3_... 215 4e-56
sp|P69079|H3_STRDR Histone H3, embryonic >gi|59799549|sp|P6... 214 1e-55
sp|P08903|H3_ENCAL Histone H3 214 1e-55
sp|P68433|H31_MOUSE Histone H3.1 >gi|55977056|sp|P68432|H31... 213 1e-55
sp|P22843|H3_ACRFO Histone H3 213 2e-55
sp|Q71T45|H3_EUPES Histone H3 >gi|73919912|sp|Q6LCK1|H3_BRA... 213 2e-55
>sp|Q71LE2|H33_PIG Histone H3.3
sp|P84244|H33_MOUSE Histone H3.3
sp|P84250|H33_DROHY Histone H3.3 (H3.A/B)
sp|P84248|H33_SPISO Histone H3.3
sp|P84245|H33_RAT Histone H3.3
sp|P84246|H33_RABIT Histone H3.3
sp|P84243|H33_HUMAN Histone H3.3
sp|P84249|H33_DROME Histone H3.3 (H3.A/B) (H3.3Q)
sp|P84247|H33_CHICK Histone H3.3 (H3.3A/B) (Histone H3 class II)
Length = 136
Score = 221 bits (562), Expect = 9e-58
Identities = 112/113 (99%), Positives = 113/113 (100%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|Q10453|H33_CAEEL Histone H3.3
Length = 136
Score = 219 bits (559), Expect = 2e-57
Identities = 111/113 (98%), Positives = 113/113 (100%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|Q8WSF1|H33_TRIPS Histone H3.3
Length = 136
Score = 219 bits (559), Expect = 2e-57
Identities = 111/113 (98%), Positives = 113/113 (100%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQSAA+GALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|P02299|H3_DROME Histone H3
sp|P84229|H31_CHICK Histone H3 (Histone H3 class I)
sp|P84239|H3_URECA Histone H3
sp|P84237|H3_TIGCA Histone H3
sp|P84235|H3_PLADU Histone H3
sp|P84234|H3_ONCMY Histone H3
sp|P84236|H3_DROHY Histone H3
sp|P84238|H3_CHITH Histone H3 (H3)
sp|P84230|H3_CAIMO Histone H3
sp|P84233|H31_XENLA Histone H3.1
sp|P84228|H32_MOUSE Histone H3.2
Length = 136
Score = 215 bits (548), Expect = 4e-56
Identities = 110/113 (97%), Positives = 112/113 (99%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|P84227|H32_BOVIN Histone H3.2
sp|P84232|H3_PORAF Histone H3
sp|P84231|H3_ICTBU Histone H3
Length = 135
Score = 215 bits (548), Expect = 4e-56
Identities = 110/113 (97%), Positives = 112/113 (99%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 23 KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 82
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 83 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>sp|P69079|H3_STRDR Histone H3, embryonic
sp|P69078|H3_SOLST Histone H3, embryonic
sp|P69077|H3_PYCHE Histone H3, embryonic
sp|P69076|H3_PSAMI Histone H3, embryonic
sp|P69075|H3_PISOC Histone H3, embryonic
sp|P69074|H3_PISBR Histone H3, embryonic
sp|P69073|H3_PARLI Histone H3, embryonic
sp|P69072|H3_LYTPI Histone H3, embryonic
sp|P69071|H3_DERIM Histone H3, embryonic
Length = 136
Score = 214 bits (544), Expect = 1e-55
Identities = 109/113 (96%), Positives = 112/113 (99%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT+L
Sbjct: 24 KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTEL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|P08903|H3_ENCAL Histone H3
Length = 135
Score = 214 bits (544), Expect = 1e-55
Identities = 108/113 (95%), Positives = 112/113 (99%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHR+RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 23 KAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 82
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 83 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>sp|P68433|H31_MOUSE Histone H3.1
sp|P68432|H31_BOVIN Histone H3.1
sp|P68431|H31_HUMAN Histone H3.1 (H3/a) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j)
(H3/k) (H3/l)
Length = 136
Score = 213 bits (543), Expect = 1e-55
Identities = 109/113 (96%), Positives = 111/113 (98%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|P22843|H3_ACRFO Histone H3
Length = 136
Score = 213 bits (541), Expect = 2e-55
Identities = 109/113 (96%), Positives = 111/113 (98%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAA KSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>sp|Q71T45|H3_EUPES Histone H3
sp|Q6LCK1|H3_BRANA Histone H3
sp|Q6LBE3|H3_ASPOF Histone H3
sp|Q53X03|H32_MAIZE Histone H3 type 2
sp|P69248|H3_PETCR Histone H3
sp|P59226|H3_ARATH Histone H3
sp|P69247|H31_ORYSA Histone H3
sp|P69246|H31_MAIZE Histone H3 type 1
Length = 136
Score = 213 bits (541), Expect = 2e-55
Identities = 107/113 (94%), Positives = 112/113 (99%)
Frame = +2
Query: 2 KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 181
KAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 83
Query: 182 RFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 340
RFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,609,732
Number of Sequences: 369166
Number of extensions: 630516
Number of successful extensions: 1516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)