Planaria EST Database

DrC_00497

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00497
         (980 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O61577|KTNA1_STRPU  Katanin p60 ATPase-containing subunit...   322   8e-88
sp|Q9PUL2|KTNA1_XENLA  Katanin p60 ATPase-containing subunit...   320   3e-87
sp|O75449|KTNA1_HUMAN  Katanin p60 ATPase-containing subunit...   313   4e-85
sp|Q9BW62|KATL1_HUMAN  Katanin p60 ATPase-containing subunit...   310   5e-84
sp|Q6E0V2|KTNA1_RAT  Katanin p60 ATPase-containing subunit A...   306   4e-83
sp|Q5XIK7|KATL1_RAT  Katanin p60 ATPase-containing subunit A...   305   2e-82
sp|Q8K0T4|KATL1_MOUSE  Katanin p60 ATPase-containing subunit...   304   2e-82
sp|Q9WV86|KTNA1_MOUSE  Katanin p60 ATPase-containing subunit...   304   3e-82
sp|Q9SEX2|KTNA1_ARATH  Katanin p60 ATPase-containing subunit...   296   5e-80
sp|P34808|MEI1_CAEEL  Meiotic spindle formation protein mei-...   227   3e-59

>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
           katanin)
          Length = 516

 Score =  322 bits (826), Expect = 8e-88
 Identities = 165/262 (62%), Positives = 206/262 (78%)
 Frame = +2

Query: 194 PAVQKKEIKKYVPSFPAEQGLIDILEKDIVQRNLNVSWDDIADLDEAKRLLKEAIVLPLL 373
           P+ ++ + KK+ P+   ++ L++ LE+DIVQRN NV W DIA L EAKRLL+EA+VLPL 
Sbjct: 197 PSGEEGDEKKFDPA-GYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLW 255

Query: 374 LPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXXXXXXXXXXKWRGESEKLI 553
           +P+YF G+R+PWKGVLM GPPGTGKT+LAKAVATEC              K+ GESEKL+
Sbjct: 256 MPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLV 315

Query: 554 RILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSELLIQIDGISSSNGQEYDA 733
           R+LF+MARFYAPSTIFIDEID+I SKR  GS +E++RRV SELLIQ+DG+S  +  E ++
Sbjct: 316 RLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGE-ES 374

Query: 734 TKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLLDINLKSIELSDDVDLDAI 913
           +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  LL INLK + L+DD+DL +I
Sbjct: 375 SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSI 434

Query: 914 AEKLDGYSGSDITQVCRDAAMM 979
           AEK+DGYSG+DIT VCRDA+MM
Sbjct: 435 AEKMDGYSGADITNVCRDASMM 456

>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
           katanin)
          Length = 486

 Score =  320 bits (821), Expect = 3e-87
 Identities = 159/281 (56%), Positives = 211/281 (75%)
 Frame = +2

Query: 137 IKDVKKPNAKPETPNRVANPAVQKKEIKKYVPSFPAEQGLIDILEKDIVQRNLNVSWDDI 316
           +K V+    K       ++  V + E+K++  S   ++ LI+ LE+DI+ +N N+ WDDI
Sbjct: 150 MKPVRAREKKDALIKNKSSADVSETEVKRFDGS-GYDKDLIEALERDIISQNPNIRWDDI 208

Query: 317 ADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXX 496
           ADL+EAK+LLKEA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVATEC+    
Sbjct: 209 ADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFF 268

Query: 497 XXXXXXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMS 676
                    K+RGESEKL+R+LF+MARFYAP+TIFIDEID+I S+R     +E++RRV +
Sbjct: 269 NISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKA 328

Query: 677 ELLIQIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVL 856
           ELL+Q+DG+  ++  E D +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  L
Sbjct: 329 ELLVQMDGVGGASENE-DPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREEL 387

Query: 857 LDINLKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAMM 979
           L INLK +EL+DDV+++ IAE +DGYSG+DIT VCRDA++M
Sbjct: 388 LRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLM 428

>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
           (p60 katanin)
          Length = 491

 Score =  313 bits (803), Expect = 4e-85
 Identities = 158/280 (56%), Positives = 211/280 (75%)
 Frame = +2

Query: 140 KDVKKPNAKPETPNRVANPAVQKKEIKKYVPSFPAEQGLIDILEKDIVQRNLNVSWDDIA 319
           ++ K+ N   E  N+ +  AV + E  K+  S   ++ L++ LE+DI+ +N NV WDDIA
Sbjct: 155 REKKEQNKGREEKNK-SPAAVTEPETNKF-DSTGYDKDLVEALERDIISQNPNVRWDDIA 212

Query: 320 DLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXX 499
           DL EAK+LLKEA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVATEC+     
Sbjct: 213 DLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFN 272

Query: 500 XXXXXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSE 679
                   K+RGESEKL+R+LF+MARFY+P+TIFIDEID+I S+R     +E++RRV +E
Sbjct: 273 VSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAE 332

Query: 680 LLIQIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLL 859
           LL+Q+DG+  ++  + D +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  LL
Sbjct: 333 LLVQMDGVGGTSEND-DPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELL 391

Query: 860 DINLKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAMM 979
            I+L+ +EL+DDVDL +IAE ++GYSG+DIT VCRDA++M
Sbjct: 392 RISLRELELADDVDLASIAENMEGYSGADITNVCRDASLM 431

>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
            A-like 1) (p60 katanin-like 1)
          Length = 490

 Score =  310 bits (793), Expect = 5e-84
 Identities = 159/296 (53%), Positives = 208/296 (70%), Gaps = 9/296 (3%)
 Frame = +2

Query: 119  VSRPKPIKDVKKPNAKPETPNRV------ANPAVQKKEIKKYVPSFPA---EQGLIDILE 271
            V R  PI   +KP+   +   R           +Q       +P F     ++ L++ LE
Sbjct: 136  VGRAHPISKSEKPSTSRDKDYRARGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEALE 195

Query: 272  KDIVQRNLNVSWDDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKT 451
            +DIV RN ++ WDDIADL+EAK+LL+EA+VLP+ +P++F G+R+PWKGVLM GPPGTGKT
Sbjct: 196  RDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKT 255

Query: 452  LLAKAVATECQXXXXXXXXXXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSK 631
            +LAKAVATEC              K+RGESEKL+R+LF+MARFYAP+TIFIDEID+I S+
Sbjct: 256  MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSR 315

Query: 632  RDDGSGNESNRRVMSELLIQIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEK 811
            R     +E++RRV SELLIQ+DG+  +   + D +K V +L ATN PWD+DEALRRRLEK
Sbjct: 316  RGTSDEHEASRRVKSELLIQMDGVGGALEND-DPSKMVMVLAATNFPWDIDEALRRRLEK 374

Query: 812  RIYIPLPGGVGRRVLLDINLKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAMM 979
            RIYIPLP   GR  LL INL+ +EL  D+ L+ IAEK++GYSG+DIT VCRDA++M
Sbjct: 375  RIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLM 430

>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
           (p60 katanin)
          Length = 491

 Score =  306 bits (785), Expect = 4e-83
 Identities = 154/277 (55%), Positives = 205/277 (74%)
 Frame = +2

Query: 149 KKPNAKPETPNRVANPAVQKKEIKKYVPSFPAEQGLIDILEKDIVQRNLNVSWDDIADLD 328
           KK  +K          AV + E  K+  S   ++ L++ LE+DI+ +N NV W DIADL 
Sbjct: 157 KKEQSKGREEKNKLPAAVTEPEANKF-DSTGYDKDLVEALERDIISQNPNVRWYDIADLV 215

Query: 329 EAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXXXXX 508
           EAK+LL+EA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVATEC+        
Sbjct: 216 EAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 275

Query: 509 XXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSELLI 688
                K+RGESEKL+R+LF+MARFY+P+TIFIDEID+I S+R     +E++RRV +ELL+
Sbjct: 276 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLV 335

Query: 689 QIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLLDIN 868
           Q+DG+  ++  + D +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  LL I+
Sbjct: 336 QMDGVGGASEND-DPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRIS 394

Query: 869 LKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAMM 979
           L+ +EL+DDV+L +IAE ++GYSG+DIT VCRDA++M
Sbjct: 395 LRELELADDVNLASIAENMEGYSGADITNVCRDASLM 431

>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
           A-like 1) (p60 katanin-like 1)
          Length = 488

 Score =  305 bits (780), Expect = 2e-82
 Identities = 149/254 (58%), Positives = 195/254 (76%), Gaps = 3/254 (1%)
 Frame = +2

Query: 227 VPSFPA---EQGLIDILEKDIVQRNLNVSWDDIADLDEAKRLLKEAIVLPLLLPNYFTGL 397
           +P F     ++ L++ LE+DIV RN ++ WDDIADL+EAK+LL+EA+VLP+ +P++F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235

Query: 398 RKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXXXXXXXXXXKWRGESEKLIRILFDMAR 577
           R+PWKGVLM GPPGTGKT+LAKAVATEC              K+RGESEKL+R+LF+MAR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295

Query: 578 FYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSELLIQIDGISSSNGQEYDATKTVTILG 757
           FYAP+TIFIDEID+I S+R     +E++RRV SELLIQ+DG+  +   + D +K V +L 
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALEND-DPSKMVMVLA 354

Query: 758 ATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLLDINLKSIELSDDVDLDAIAEKLDGYS 937
           ATN PWD+DEALRRRLEKRIYIPLP   GR  LL I+L+ +EL  D+ L+ IAEK +GYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYS 414

Query: 938 GSDITQVCRDAAMM 979
           G+DIT +CRDA++M
Sbjct: 415 GADITNICRDASLM 428

>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
           A-like 1) (p60 katanin-like 1)
          Length = 488

 Score =  304 bits (779), Expect = 2e-82
 Identities = 152/267 (56%), Positives = 198/267 (74%), Gaps = 3/267 (1%)
 Frame = +2

Query: 188 ANPAVQKKEIKKYVPSFPA---EQGLIDILEKDIVQRNLNVSWDDIADLDEAKRLLKEAI 358
           A   VQ       +P F     ++ L++ LE+DIV RN ++ WDDIADL+EAK+LL+EA+
Sbjct: 163 ARKNVQDGASDSEIPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAV 222

Query: 359 VLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXXXXXXXXXXKWRGE 538
           VLP+ +P++F G+R+PWKGVLM GPPGTGKT+LAKAVATEC              K+RGE
Sbjct: 223 VLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 282

Query: 539 SEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSELLIQIDGISSSNG 718
           SEKL+R+LF+MARFYAP+TIFIDEID+I S+R     +E++RRV SELLIQ+DG+  +  
Sbjct: 283 SEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALE 342

Query: 719 QEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLLDINLKSIELSDDV 898
            + D +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  LL I+L+ +EL  DV
Sbjct: 343 ND-DPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDV 401

Query: 899 DLDAIAEKLDGYSGSDITQVCRDAAMM 979
            L+ IA+K +GYSG+DIT +CRDA++M
Sbjct: 402 HLEDIADKTEGYSGADITNICRDASLM 428

>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
           (p60 katanin) (Lipotransin)
          Length = 491

 Score =  304 bits (778), Expect = 3e-82
 Identities = 152/277 (54%), Positives = 204/277 (73%)
 Frame = +2

Query: 149 KKPNAKPETPNRVANPAVQKKEIKKYVPSFPAEQGLIDILEKDIVQRNLNVSWDDIADLD 328
           KK  +K          AV + E  K+      ++ L++ LE+DI+ +N NV W DIADL 
Sbjct: 157 KKEQSKGREEKNKLPAAVTEPEANKF-DGTGYDKDLVEALERDIISQNPNVRWYDIADLV 215

Query: 329 EAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATECQXXXXXXXX 508
           EAK+LL+EA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVATEC+        
Sbjct: 216 EAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 275

Query: 509 XXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNESNRRVMSELLI 688
                K+RGESEKL+R+LF+MARFY+P+TIFIDEID+I S+R     +E++RR+ +ELL+
Sbjct: 276 STLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLV 335

Query: 689 QIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGGVGRRVLLDIN 868
           Q+DG+  ++  + D +K V +L ATN PWD+DEALRRRLEKRIYIPLP   GR  LL I+
Sbjct: 336 QMDGVGGASEND-DPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRIS 394

Query: 869 LKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAMM 979
           L+ +EL+DDV+L +IAE ++GYSG+DIT VCRDA++M
Sbjct: 395 LRELELADDVNLASIAENMEGYSGADITNVCRDASLM 431

>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
           katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1
           protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT
           protein) (FRAGILE FIBER 2 protein) (AtAAA1)
          Length = 523

 Score =  296 bits (759), Expect = 5e-80
 Identities = 140/244 (57%), Positives = 185/244 (75%)
 Frame = +2

Query: 245 EQGLIDILEKDIVQRNLNVSWDDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLM 424
           ++ L  +LE+D++     V WDD+A L EAKRLL+EA+VLPL +P YF G+R+PWKGVLM
Sbjct: 218 DEDLAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLM 277

Query: 425 FGPPGTGKTLLAKAVATECQXXXXXXXXXXXXXKWRGESEKLIRILFDMARFYAPSTIFI 604
           FGPPGTGKTLLAKAVATEC              KWRGESE+++R LFD+AR YAPSTIFI
Sbjct: 278 FGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFI 337

Query: 605 DEIDAIGSKRDDGSGNESNRRVMSELLIQIDGISSSNGQEYDATKTVTILGATNLPWDLD 784
           DEID++ + R     +ES+RRV SELL+Q+DG+S++   E  + K V +L ATN PWD+D
Sbjct: 338 DEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDID 397

Query: 785 EALRRRLEKRIYIPLPGGVGRRVLLDINLKSIELSDDVDLDAIAEKLDGYSGSDITQVCR 964
           EALRRRLEKRIYIPLP    R+ L++INL+++E++ DV+++ +A + +GYSG D+T VCR
Sbjct: 398 EALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCR 457

Query: 965 DAAM 976
           DA+M
Sbjct: 458 DASM 461

>sp|P34808|MEI1_CAEEL Meiotic spindle formation protein mei-1 (Katanin ATPase-containing
           subunit)
          Length = 472

 Score =  227 bits (579), Expect = 3e-59
 Identities = 107/226 (47%), Positives = 159/226 (70%)
 Frame = +2

Query: 299 VSWDDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVATE 478
           +S DDI  + + K++L EA+ LPLL+P +F GLR PWK +++ GPPGTGKTL+A+A+A+E
Sbjct: 190 MSLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249

Query: 479 CQXXXXXXXXXXXXXKWRGESEKLIRILFDMARFYAPSTIFIDEIDAIGSKRDDGSGNES 658
                          KWRG+SEK++R+LF++ARFYAPS IFIDEID +G +R +   +E+
Sbjct: 250 SSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEA 309

Query: 659 NRRVMSELLIQIDGISSSNGQEYDATKTVTILGATNLPWDLDEALRRRLEKRIYIPLPGG 838
           +RRV SE L+Q+DG      Q    ++ V +L ATN+PW+LDEALRRR EKRI+IPLP  
Sbjct: 310 SRRVKSEFLVQMDG-----SQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDI 364

Query: 839 VGRRVLLDINLKSIELSDDVDLDAIAEKLDGYSGSDITQVCRDAAM 976
             R+ L++ +++    SD+++ D +A + +G+SG+D+  +CR AA+
Sbjct: 365 DARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAI 410

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,653,961
Number of Sequences: 369166
Number of extensions: 2568388
Number of successful extensions: 10479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9748
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00497

  1. Dr_sW_008_I16
  2. Dr_sW_013_C18