Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I16
(171 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit... 99 4e-21
sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit... 98 7e-21
sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit... 96 2e-20
sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit... 96 2e-20
sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A... 96 2e-20
sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit... 96 3e-20
sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit... 93 2e-19
sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A... 92 4e-19
sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit... 92 4e-19
sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 pro... 81 7e-16
>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1
protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT
protein) (FRAGILE FIBER 2 protein) (AtAAA1)
Length = 523
Score = 98.6 bits (244), Expect = 4e-21
Identities = 45/56 (80%), Positives = 51/56 (91%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DD+A L EAKRLL+EA+VLPL +P YF G+R+PWKGVLMFGPPGTGKTLLAKAVAT
Sbjct: 239 DDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVAT 294
>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
katanin)
Length = 486
Score = 97.8 bits (242), Expect = 7e-21
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DDIADL+EAK+LLKEA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVAT
Sbjct: 206 DDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 261
>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 490
Score = 96.3 bits (238), Expect = 2e-20
Identities = 42/56 (75%), Positives = 53/56 (94%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DDIADL+EAK+LL+EA+VLP+ +P++F G+R+PWKGVLM GPPGTGKT+LAKAVAT
Sbjct: 208 DDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 263
>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 488
Score = 96.3 bits (238), Expect = 2e-20
Identities = 42/56 (75%), Positives = 53/56 (94%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DDIADL+EAK+LL+EA+VLP+ +P++F G+R+PWKGVLM GPPGTGKT+LAKAVAT
Sbjct: 206 DDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 261
>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 488
Score = 96.3 bits (238), Expect = 2e-20
Identities = 42/56 (75%), Positives = 53/56 (94%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DDIADL+EAK+LL+EA+VLP+ +P++F G+R+PWKGVLM GPPGTGKT+LAKAVAT
Sbjct: 206 DDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 261
>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
(p60 katanin)
Length = 491
Score = 95.9 bits (237), Expect = 3e-20
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DDIADL EAK+LLKEA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVAT
Sbjct: 209 DDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 264
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit (Katanin p60 subunit) (p60
katanin)
Length = 516
Score = 93.2 bits (230), Expect = 2e-19
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = +3
Query: 6 DIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DIA L EAKRLL+EA+VLPL +P+YF G+R+PWKGVLM GPPGTGKT+LAKAVAT
Sbjct: 235 DIAGLTEAKRLLEEAVVLPLWMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 289
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
(p60 katanin)
Length = 491
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +3
Query: 6 DIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DIADL EAK+LL+EA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVAT
Sbjct: 210 DIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 264
>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
(p60 katanin) (Lipotransin)
Length = 491
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +3
Query: 6 DIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
DIADL EAK+LL+EA+VLP+ +P +F G+R+PWKGVLM GPPGTGKTLLAKAVAT
Sbjct: 210 DIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 264
>sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 protein) (hVPS4) (VPS4-1)
Length = 437
Score = 81.3 bits (199), Expect = 7e-16
Identities = 35/56 (62%), Positives = 46/56 (82%)
Frame = +3
Query: 3 DDIADLDEAKRLLKEAIVLPLLLPNYFTGLRKPWKGVLMFGPPGTGKTLLAKAVAT 170
+D+A L+ AK LKEA++LP+ P+ FTG R PW+G+L+FGPPGTGK+ LAKAVAT
Sbjct: 127 NDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,946,473
Number of Sequences: 369166
Number of extensions: 349901
Number of successful extensions: 3222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 68,354,980
effective HSP length: 29
effective length of database: 62,997,665
effective search space used: 1700936955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)