Planaria EST Database


DrC_00496

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00496
         (899 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NUQ9|FA49B_HUMAN  Protein FAM49B (L1)                        185   1e-46
sp|Q921M7|FA49B_MOUSE  Protein FAM49B                             184   3e-46
sp|Q9H0Q0|FA49A_HUMAN  Protein FAM49A                             177   4e-44
sp|Q8BHZ0|FA49A_MOUSE  Protein FAM49A                             177   4e-44
sp|P52891|NUP84_YEAST  Nucleoporin NUP84 (Nuclear pore prote...    33   0.83 
sp|P38995|ATU2_YEAST  Probable copper-transporting ATPase (C...    31   4.1  
sp|Q15569|TESK1_HUMAN  Dual specificity testis-specific prot...    30   9.2  
sp|Q03824|YM37_YEAST  Hypothetical 81.5 kDa protein in HLJ1-...    30   9.2  
>sp|Q9NUQ9|FA49B_HUMAN Protein FAM49B (L1)
          Length = 324

 Score =  185 bits (470), Expect = 1e-46
 Identities = 98/210 (46%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
 Frame = +2

Query: 2   SINEHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAK 181
           S  +HLE +QA  KQFA+IL F L+FD LKM +P+IQND                +V A+
Sbjct: 117 SPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRI--NNVPAE 174

Query: 182 -EDTVTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGI 358
            E+ V +E+   MSLFYAE+TPMLK ++ + +K+ +E+ ++PIE TT+CL+TMA +CR +
Sbjct: 175 GENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVM 234

Query: 359 VANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGL 538
           +  PE + R  T  +TV  CLRVM  VII+YD + P G F +TSKID+K C+K+LK+Q  
Sbjct: 235 LETPEYRSRF-TNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPP 293

Query: 539 HQTSPLFSAIRFSTVHFNDETTPRNIKSLI 628
           +    L +A+R++T H NDETT + IKS++
Sbjct: 294 NSVEGLLNALRYTTKHLNDETTSKQIKSML 323
>sp|Q921M7|FA49B_MOUSE Protein FAM49B
          Length = 324

 Score =  184 bits (467), Expect = 3e-46
 Identities = 97/210 (46%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
 Frame = +2

Query: 2   SINEHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAK 181
           S  +HLE +QA  KQFA+IL F L+FD LKM +P+IQND                +V A+
Sbjct: 117 SPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRI--NNVPAE 174

Query: 182 -EDTVTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGI 358
            E+ V +E+   MSLFYAE+TPMLK ++ + +K+ +E+ ++PIE TT+CL+TMA +CR +
Sbjct: 175 GENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVM 234

Query: 359 VANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGL 538
           +  PE + R  T  +TV  CLRVM  VII+YD + P G F +TSKID+K C+K+LK+Q  
Sbjct: 235 LETPEYRSRF-TNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPP 293

Query: 539 HQTSPLFSAIRFSTVHFNDETTPRNIKSLI 628
           +    L +A+R++T H NDETT + I+S++
Sbjct: 294 NSVEGLLNALRYTTKHLNDETTSKQIRSML 323
>sp|Q9H0Q0|FA49A_HUMAN Protein FAM49A
          Length = 323

 Score =  177 bits (449), Expect = 4e-44
 Identities = 89/206 (43%), Positives = 134/206 (65%)
 Frame = +2

Query: 11  EHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAKEDT 190
           +HLE +QA  K+FA+IL F L+FD LKM +P+IQND                 +   E+ 
Sbjct: 119 QHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDI-ENE 177

Query: 191 VTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGIVANP 370
           V +E+   MSLFYAE+TPMLK ++ +   + +E+ ++PIE TT+CL+TM  +C+ ++  P
Sbjct: 178 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETP 237

Query: 371 ELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGLHQTS 550
           E + R  T  +T+M C+RVM  VII+YD + P G F +TSKID+K C+K+LKEQ      
Sbjct: 238 EYRSRF-TSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVE 296

Query: 551 PLFSAIRFSTVHFNDETTPRNIKSLI 628
            L +A+RF+T H NDE+T + I++++
Sbjct: 297 GLLNALRFTTKHLNDESTSKQIRAML 322
>sp|Q8BHZ0|FA49A_MOUSE Protein FAM49A
          Length = 323

 Score =  177 bits (449), Expect = 4e-44
 Identities = 89/206 (43%), Positives = 134/206 (65%)
 Frame = +2

Query: 11  EHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAKEDT 190
           +HLE +QA  K+FA+IL F L+FD LKM +P+IQND                 +   E+ 
Sbjct: 119 QHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDI-ENE 177

Query: 191 VTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGIVANP 370
           V +E+   MSLFYAE+TPMLK ++ +   + +E+ ++PIE TT+CL+TM  +C+ ++  P
Sbjct: 178 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETP 237

Query: 371 ELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGLHQTS 550
           E + R  T  +T+M C+RVM  VII+YD + P G F +TSKID+K C+K+LKEQ      
Sbjct: 238 EYRSRF-TSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVE 296

Query: 551 PLFSAIRFSTVHFNDETTPRNIKSLI 628
            L +A+RF+T H NDE+T + I++++
Sbjct: 297 GLLNALRFTTKHLNDESTSKQIRAML 322
>sp|P52891|NUP84_YEAST Nucleoporin NUP84 (Nuclear pore protein NUP84)
          Length = 726

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = +2

Query: 296 SVPIETTTECLATMAKICRGIVANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGV 475
           SV +++    + +  ++   +V   E  + +I  P      LR++T + I  D+++P  V
Sbjct: 349 SVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKP----YLLRIVTHLAICLDIINPGSV 404

Query: 476 FKRTSKIDIKACLKILKEQGLHQTSPLFS 562
            +      I   + +LK QGL++  P+++
Sbjct: 405 EEVDKSKLITTYISLLKLQGLYENIPIYA 433
>sp|P38995|ATU2_YEAST Probable copper-transporting ATPase (Cu(2+)-ATPase)
          Length = 1004

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
 Frame = -3

Query: 441 ITAVMTRKHNITVSGGVINLCCNSGFATIPRQILAIVAKHSVVVSI------------GT 298
           ITA+ T++  ++V G    + C S  +T+ +Q+  I    SVVVS+             T
Sbjct: 74  ITAISTKEGLLSVQG----MTCGSCVSTVTKQVEGIEGVESVVVSLVTEECHVIYEPSKT 129

Query: 297 LTSSARHFEIDLVINFNIGVDSA*NSDIFPHTSSVTVS 184
              +AR    D   + NI +D   N+D+   T  + V+
Sbjct: 130 TLETAREMIEDCGFDSNIIMDGNGNADMTEKTVILKVT 167
>sp|Q15569|TESK1_HUMAN Dual specificity testis-specific protein kinase 1 (Testicular
           protein kinase 1)
          Length = 626

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 209 GNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLA---TMAKICRGIVANPELQ 379
           G + L    S P+L L+  S          +P+ TT E L    T A+ CR + ++PEL 
Sbjct: 390 GKIKLLDTPSKPVLPLVPPS----PFPSTQLPLVTTPETLVQPGTPARRCRSLPSSPELP 445

Query: 380 HRLIT 394
            R+ T
Sbjct: 446 RRMET 450
>sp|Q03824|YM37_YEAST Hypothetical 81.5 kDa protein in HLJ1-SMP2 intergenic region
          Length = 705

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 693 SKYIKSIVYFTSNLIFYAVASIIKDLIFLGVVSSL 589
           S  IK ++ F+S+ +FY + SII D++     S L
Sbjct: 292 SSVIKELLVFSSDALFYKLKSIIPDIVIFSDTSEL 326
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,377,908
Number of Sequences: 369166
Number of extensions: 1773863
Number of successful extensions: 4487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00496

  1. Dr_sW_013_C15
  2. Dr_sW_003_D08