Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D08
(898 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NUQ9|FA49B_HUMAN Protein FAM49B (L1) 185 1e-46
sp|Q921M7|FA49B_MOUSE Protein FAM49B 184 3e-46
sp|Q9H0Q0|FA49A_HUMAN Protein FAM49A 177 4e-44
sp|Q8BHZ0|FA49A_MOUSE Protein FAM49A 177 4e-44
sp|P52891|NUP84_YEAST Nucleoporin NUP84 (Nuclear pore prote... 33 0.83
sp|P38995|ATU2_YEAST Probable copper-transporting ATPase (C... 31 4.1
sp|Q15569|TESK1_HUMAN Dual specificity testis-specific prot... 30 9.1
sp|Q03824|YM37_YEAST Hypothetical 81.5 kDa protein in HLJ1-... 30 9.1
>sp|Q9NUQ9|FA49B_HUMAN Protein FAM49B (L1)
Length = 324
Score = 185 bits (470), Expect = 1e-46
Identities = 98/210 (46%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 SINEHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAK 180
S +HLE +QA KQFA+IL F L+FD LKM +P+IQND +V A+
Sbjct: 117 SPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRI--NNVPAE 174
Query: 181 -EDTVTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGI 357
E+ V +E+ MSLFYAE+TPMLK ++ + +K+ +E+ ++PIE TT+CL+TMA +CR +
Sbjct: 175 GENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVM 234
Query: 358 VANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGL 537
+ PE + R T +TV CLRVM VII+YD + P G F +TSKID+K C+K+LK+Q
Sbjct: 235 LETPEYRSRF-TNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPP 293
Query: 538 HQTSPLFSAIRFSTVHFNDETTPRNIKSLI 627
+ L +A+R++T H NDETT + IKS++
Sbjct: 294 NSVEGLLNALRYTTKHLNDETTSKQIKSML 323
>sp|Q921M7|FA49B_MOUSE Protein FAM49B
Length = 324
Score = 184 bits (467), Expect = 3e-46
Identities = 97/210 (46%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 SINEHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAK 180
S +HLE +QA KQFA+IL F L+FD LKM +P+IQND +V A+
Sbjct: 117 SPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRI--NNVPAE 174
Query: 181 -EDTVTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGI 357
E+ V +E+ MSLFYAE+TPMLK ++ + +K+ +E+ ++PIE TT+CL+TMA +CR +
Sbjct: 175 GENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVM 234
Query: 358 VANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGL 537
+ PE + R T +TV CLRVM VII+YD + P G F +TSKID+K C+K+LK+Q
Sbjct: 235 LETPEYRSRF-TNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPP 293
Query: 538 HQTSPLFSAIRFSTVHFNDETTPRNIKSLI 627
+ L +A+R++T H NDETT + I+S++
Sbjct: 294 NSVEGLLNALRYTTKHLNDETTSKQIRSML 323
>sp|Q9H0Q0|FA49A_HUMAN Protein FAM49A
Length = 323
Score = 177 bits (449), Expect = 4e-44
Identities = 89/206 (43%), Positives = 134/206 (65%)
Frame = +1
Query: 10 EHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAKEDT 189
+HLE +QA K+FA+IL F L+FD LKM +P+IQND + E+
Sbjct: 119 QHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDI-ENE 177
Query: 190 VTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGIVANP 369
V +E+ MSLFYAE+TPMLK ++ + + +E+ ++PIE TT+CL+TM +C+ ++ P
Sbjct: 178 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETP 237
Query: 370 ELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGLHQTS 549
E + R T +T+M C+RVM VII+YD + P G F +TSKID+K C+K+LKEQ
Sbjct: 238 EYRSRF-TSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVE 296
Query: 550 PLFSAIRFSTVHFNDETTPRNIKSLI 627
L +A+RF+T H NDE+T + I++++
Sbjct: 297 GLLNALRFTTKHLNDESTSKQIRAML 322
>sp|Q8BHZ0|FA49A_MOUSE Protein FAM49A
Length = 323
Score = 177 bits (449), Expect = 4e-44
Identities = 89/206 (43%), Positives = 134/206 (65%)
Frame = +1
Query: 10 EHLESKQATFKQFADILDFILKFDSLKMMSPSIQNDLXXXXXXXXXXXTYGQDVIAKEDT 189
+HLE +QA K+FA+IL F L+FD LKM +P+IQND + E+
Sbjct: 119 QHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDI-ENE 177
Query: 190 VTDEVCGNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLATMAKICRGIVANP 369
V +E+ MSLFYAE+TPMLK ++ + + +E+ ++PIE TT+CL+TM +C+ ++ P
Sbjct: 178 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETP 237
Query: 370 ELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGVFKRTSKIDIKACLKILKEQGLHQTS 549
E + R T +T+M C+RVM VII+YD + P G F +TSKID+K C+K+LKEQ
Sbjct: 238 EYRSRF-TSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVE 296
Query: 550 PLFSAIRFSTVHFNDETTPRNIKSLI 627
L +A+RF+T H NDE+T + I++++
Sbjct: 297 GLLNALRFTTKHLNDESTSKQIRAML 322
>sp|P52891|NUP84_YEAST Nucleoporin NUP84 (Nuclear pore protein NUP84)
Length = 726
Score = 33.5 bits (75), Expect = 0.83
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +1
Query: 295 SVPIETTTECLATMAKICRGIVANPELQHRLITPPDTVMLCLRVMTAVIIIYDLLDPNGV 474
SV +++ + + ++ +V E + +I P LR++T + I D+++P V
Sbjct: 349 SVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKP----YLLRIVTHLAICLDIINPGSV 404
Query: 475 FKRTSKIDIKACLKILKEQGLHQTSPLFS 561
+ I + +LK QGL++ P+++
Sbjct: 405 EEVDKSKLITTYISLLKLQGLYENIPIYA 433
>sp|P38995|ATU2_YEAST Probable copper-transporting ATPase (Cu(2+)-ATPase)
Length = 1004
Score = 31.2 bits (69), Expect = 4.1
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Frame = -3
Query: 440 ITAVMTRKHNITVSGGVINLCCNSGFATIPRQILAIVAKHSVVVSI------------GT 297
ITA+ T++ ++V G + C S +T+ +Q+ I SVVVS+ T
Sbjct: 74 ITAISTKEGLLSVQG----MTCGSCVSTVTKQVEGIEGVESVVVSLVTEECHVIYEPSKT 129
Query: 296 LTSSARHFEIDLVINFNIGVDSA*NSDIFPHTSSVTVS 183
+AR D + NI +D N+D+ T + V+
Sbjct: 130 TLETAREMIEDCGFDSNIIMDGNGNADMTEKTVILKVT 167
>sp|Q15569|TESK1_HUMAN Dual specificity testis-specific protein kinase 1 (Testicular
protein kinase 1)
Length = 626
Score = 30.0 bits (66), Expect = 9.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 208 GNMSLFYAESTPMLKLITRSISKWRAEDVSVPIETTTECLA---TMAKICRGIVANPELQ 378
G + L S P+L L+ S +P+ TT E L T A+ CR + ++PEL
Sbjct: 390 GKIKLLDTPSKPVLPLVPPS----PFPSTQLPLVTTPETLVQPGTPARRCRSLPSSPELP 445
Query: 379 HRLIT 393
R+ T
Sbjct: 446 RRMET 450
>sp|Q03824|YM37_YEAST Hypothetical 81.5 kDa protein in HLJ1-SMP2 intergenic region
Length = 705
Score = 30.0 bits (66), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 692 SKYIKSIVYFTSNLIFYAVASIIKDLIFLGVVSSL 588
S IK ++ F+S+ +FY + SII D++ S L
Sbjct: 292 SSVIKELLVFSSDALFYKLKSIIPDIVIFSDTSEL 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,269,727
Number of Sequences: 369166
Number of extensions: 1771043
Number of successful extensions: 4480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4472
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)