Planaria EST Database

DrC_00475

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00475
         (613 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15038|DAZP2_HUMAN  DAZ-associated protein 2 (Deleted in ...    45   1e-04
sp|Q9DCP9|DAZP2_MOUSE  DAZ-associated protein 2 (Deleted in ...    44   4e-04
sp|P60486|DAZP2_RAT  DAZ-associated protein 2 (Deleted in az...    44   4e-04

>sp|Q15038|DAZP2_HUMAN DAZ-associated protein 2 (Deleted in azoospermia-associated protein
           2)
          Length = 168

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 184 TVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQRKQDFWFGNED 357
           TV     +D+GARF    +             NAAQLA MQG NV+VTQRK +F+ G  D
Sbjct: 103 TVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSD 162

>sp|Q9DCP9|DAZP2_MOUSE DAZ-associated protein 2 (Deleted in azoospermia-associated protein
           2) (Proline-rich protein expressed in brain)
          Length = 168

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 154 PHFQPSTSNVTVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQR 327
           P + P ++   V     +D+GARF    +             NAAQLA MQG NV+VTQR
Sbjct: 96  PIYPPGSA---VLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQLAVMQGANVLVTQR 152

Query: 328 KQDFWFGNED 357
           K +F+ G  D
Sbjct: 153 KGNFFMGGSD 162

>sp|P60486|DAZP2_RAT DAZ-associated protein 2 (Deleted in azoospermia-associated protein
           2)
          Length = 108

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 154 PHFQPSTSNVTVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQR 327
           P + P ++   V     +D+GARF    +             NAAQLA MQG NV+VTQR
Sbjct: 36  PIYPPGSA---VLVEGGYDAGARFGAGATTGSIPPPPPGCPPNAAQLAVMQGANVLVTQR 92

Query: 328 KQDFWFGNED 357
           K +F+ G  D
Sbjct: 93  KGNFFMGGSD 102

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,604,382
Number of Sequences: 369166
Number of extensions: 830259
Number of successful extensions: 1405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00475

  1. Dr_sW_011_E24
  2. Dr_sW_012_K21