Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K21
(613 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15038|DAZP2_HUMAN DAZ-associated protein 2 (Deleted in ... 45 1e-04
sp|Q9DCP9|DAZP2_MOUSE DAZ-associated protein 2 (Deleted in ... 44 4e-04
sp|P60486|DAZP2_RAT DAZ-associated protein 2 (Deleted in az... 44 4e-04
>sp|Q15038|DAZP2_HUMAN DAZ-associated protein 2 (Deleted in azoospermia-associated protein
2)
Length = 168
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 184 TVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQRKQDFWFGNED 357
TV +D+GARF + NAAQLA MQG NV+VTQRK +F+ G D
Sbjct: 103 TVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSD 162
>sp|Q9DCP9|DAZP2_MOUSE DAZ-associated protein 2 (Deleted in azoospermia-associated protein
2) (Proline-rich protein expressed in brain)
Length = 168
Score = 43.5 bits (101), Expect = 4e-04
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 154 PHFQPSTSNVTVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQR 327
P + P ++ V +D+GARF + NAAQLA MQG NV+VTQR
Sbjct: 96 PIYPPGSA---VLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQLAVMQGANVLVTQR 152
Query: 328 KQDFWFGNED 357
K +F+ G D
Sbjct: 153 KGNFFMGGSD 162
>sp|P60486|DAZP2_RAT DAZ-associated protein 2 (Deleted in azoospermia-associated protein
2)
Length = 108
Score = 43.5 bits (101), Expect = 4e-04
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 154 PHFQPSTSNVTVYAPNAFDSGARFDI--SRXXXXXXXXXXXXNAAQLAAMQGHNVVVTQR 327
P + P ++ V +D+GARF + NAAQLA MQG NV+VTQR
Sbjct: 36 PIYPPGSA---VLVEGGYDAGARFGAGATTGSIPPPPPGCPPNAAQLAVMQGANVLVTQR 92
Query: 328 KQDFWFGNED 357
K +F+ G D
Sbjct: 93 KGNFFMGGSD 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,604,382
Number of Sequences: 369166
Number of extensions: 830259
Number of successful extensions: 1405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)