DrC_00470
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00470 (735 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein precursor 120 4e-27 sp|Q923V8|SEP15_RAT 15 kDa selenoprotein precursor 120 4e-27 sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor 120 4e-27 sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein precursor 120 4e-27 sp|Q802F3|SEP15_BRARE 15 kDa selenoprotein precursor 117 2e-26 sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial pr... 30 5.1 sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2 30 8.7
>sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein precursor Length = 162 Score = 120 bits (301), Expect = 4e-27 Identities = 58/122 (47%), Positives = 76/122 (62%) Frame = +1 Query: 97 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 276 C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97 Query: 277 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 456 FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157 Query: 457 RL 462 +L Sbjct: 158 KL 159
>sp|Q923V8|SEP15_RAT 15 kDa selenoprotein precursor Length = 162 Score = 120 bits (301), Expect = 4e-27 Identities = 58/122 (47%), Positives = 76/122 (62%) Frame = +1 Query: 97 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 276 C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97 Query: 277 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 456 FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157 Query: 457 RL 462 +L Sbjct: 158 KL 159
>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor Length = 162 Score = 120 bits (301), Expect = 4e-27 Identities = 58/122 (47%), Positives = 76/122 (62%) Frame = +1 Query: 97 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 276 C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97 Query: 277 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 456 FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157 Query: 457 RL 462 +L Sbjct: 158 KL 159
>sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein precursor Length = 157 Score = 120 bits (301), Expect = 4e-27 Identities = 57/122 (46%), Positives = 77/122 (63%) Frame = +1 Query: 97 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 276 C+ LGF+S C C L F+L SIQP C CC + + YP A L VCG +LGR Sbjct: 29 CRELGFSSCWGCSSCDLLGEFSLSSIQPVCKQCCQQEVHMESRKLYPGAILEVCGCKLGR 88 Query: 277 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 456 FPQ+QAF++S K ++I YVRG+DP+++LLD+N EE I KW+TD++ EF E Sbjct: 89 FPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDDNGNIAEEPSILKWNTDSVEEFLSE 148 Query: 457 RL 462 +L Sbjct: 149 KL 150
>sp|Q802F3|SEP15_BRARE 15 kDa selenoprotein precursor Length = 153 Score = 117 bits (294), Expect = 2e-26 Identities = 57/122 (46%), Positives = 76/122 (62%) Frame = +1 Query: 97 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 276 C+ LGF+S+L C C L F+L + C CC + YP A L VCG +LGR Sbjct: 29 CRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRKLYPGAILEVCGCKLGR 88 Query: 277 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 456 FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E Sbjct: 89 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 148 Query: 457 RL 462 +L Sbjct: 149 KL 150
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial precursor (Lon protease-like protein) (LONP) (LONHs) Length = 959 Score = 30.4 bits (67), Expect = 5.1 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = +1 Query: 373 LLDENKVTVEELGIEKWDTDTIIEFFQERL 462 L ++ K+ +ELG+EK D D I E F+ERL Sbjct: 396 LQEQLKIIKKELGLEKDDKDAIEEKFRERL 425
>sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2 Length = 1009 Score = 29.6 bits (65), Expect = 8.7 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Frame = +1 Query: 247 LVVCG*QLGRFPQIQAFIKSAKAAELP---NVEISYVRGSDP--VIRLLDENKVTVEELG 411 LVV G G PQ IK AKAAE+P V GSDP V+ L ++++ VE LG Sbjct: 584 LVVAGDD-GVMPQTIEAIKHAKAAEVPIIVAVNKMDKPGSDPTRVVNELLQHEIVVESLG 642
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,778,440
Number of Sequences: 369166
Number of extensions: 1270933
Number of successful extensions: 2964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2964
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
