Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C10
(702 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein precursor 120 3e-27
sp|Q923V8|SEP15_RAT 15 kDa selenoprotein precursor 120 3e-27
sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor 120 3e-27
sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein precursor 120 3e-27
sp|Q802F3|SEP15_BRARE 15 kDa selenoprotein precursor 117 2e-26
sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial pr... 30 4.7
sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2 30 8.1
>sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein precursor
Length = 162
Score = 120 bits (301), Expect = 3e-27
Identities = 58/122 (47%), Positives = 76/122 (62%)
Frame = +1
Query: 64 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 243
C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR
Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97
Query: 244 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 423
FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E
Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157
Query: 424 RL 429
+L
Sbjct: 158 KL 159
>sp|Q923V8|SEP15_RAT 15 kDa selenoprotein precursor
Length = 162
Score = 120 bits (301), Expect = 3e-27
Identities = 58/122 (47%), Positives = 76/122 (62%)
Frame = +1
Query: 64 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 243
C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR
Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97
Query: 244 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 423
FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E
Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157
Query: 424 RL 429
+L
Sbjct: 158 KL 159
>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor
Length = 162
Score = 120 bits (301), Expect = 3e-27
Identities = 58/122 (47%), Positives = 76/122 (62%)
Frame = +1
Query: 64 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 243
C+ LGF+S+L C C L FNL + P C CC + Y A L VCG +LGR
Sbjct: 38 CRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGCKLGR 97
Query: 244 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 423
FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E
Sbjct: 98 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157
Query: 424 RL 429
+L
Sbjct: 158 KL 159
>sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein precursor
Length = 157
Score = 120 bits (301), Expect = 3e-27
Identities = 57/122 (46%), Positives = 77/122 (63%)
Frame = +1
Query: 64 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 243
C+ LGF+S C C L F+L SIQP C CC + + YP A L VCG +LGR
Sbjct: 29 CRELGFSSCWGCSSCDLLGEFSLSSIQPVCKQCCQQEVHMESRKLYPGAILEVCGCKLGR 88
Query: 244 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 423
FPQ+QAF++S K ++I YVRG+DP+++LLD+N EE I KW+TD++ EF E
Sbjct: 89 FPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDDNGNIAEEPSILKWNTDSVEEFLSE 148
Query: 424 RL 429
+L
Sbjct: 149 KL 150
>sp|Q802F3|SEP15_BRARE 15 kDa selenoprotein precursor
Length = 153
Score = 117 bits (294), Expect = 2e-26
Identities = 57/122 (46%), Positives = 76/122 (62%)
Frame = +1
Query: 64 CKSLGFASDLKCGRCIELKNFNLQSIQPTCNSCCDKNFTESATVKYPYAKLVVCG*QLGR 243
C+ LGF+S+L C C L F+L + C CC + YP A L VCG +LGR
Sbjct: 29 CRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRKLYPGAILEVCGCKLGR 88
Query: 244 FPQIQAFIKSAKAAELPNVEISYVRGSDPVIRLLDENKVTVEELGIEKWDTDTIIEFFQE 423
FPQ+QAF++S K ++I YVRGSDPV++LLD+N EEL I KW+TD++ EF E
Sbjct: 89 FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE 148
Query: 424 RL 429
+L
Sbjct: 149 KL 150
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial precursor (Lon protease-like
protein) (LONP) (LONHs)
Length = 959
Score = 30.4 bits (67), Expect = 4.7
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 340 LLDENKVTVEELGIEKWDTDTIIEFFQERL 429
L ++ K+ +ELG+EK D D I E F+ERL
Sbjct: 396 LQEQLKIIKKELGLEKDDKDAIEEKFRERL 425
>sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2
Length = 1009
Score = 29.6 bits (65), Expect = 8.1
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 214 LVVCG*QLGRFPQIQAFIKSAKAAELP---NVEISYVRGSDP--VIRLLDENKVTVEELG 378
LVV G G PQ IK AKAAE+P V GSDP V+ L ++++ VE LG
Sbjct: 584 LVVAGDD-GVMPQTIEAIKHAKAAEVPIIVAVNKMDKPGSDPTRVVNELLQHEIVVESLG 642
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,815,955
Number of Sequences: 369166
Number of extensions: 1256492
Number of successful extensions: 2933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)