Planaria EST Database

DrC_00435

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00435
         (929 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15428|SF3A2_HUMAN  Splicing factor 3A subunit 2 (Spliceo...   348   9e-96
sp|Q62203|SF3A2_MOUSE  Splicing factor 3A subunit 2 (Spliceo...   320   5e-87
sp|Q07350|PRP11_YEAST  Pre-mRNA splicing factor PRP11              83   1e-15
sp|O88466|ZF106_MOUSE  Zinc finger protein 106 (Zfp-106) (Zi...    37   0.079
sp|Q9R0B7|ZN346_MOUSE  Zinc finger protein 346 (Just another...    35   0.30 
sp|Q9UL40|ZN346_HUMAN  Zinc finger protein 346 (Just another...    35   0.30 
sp|Q5R4W8|ZN346_PONPY  Zinc finger protein 346                     35   0.30 
sp|Q9CPW7|ZMAT2_MOUSE  Zinc finger matrin type 2 >gi|5278353...    33   1.5  
sp|Q9H2Y7|ZF106_HUMAN  Zinc finger protein 106 homolog (Zfp-...    33   1.5  
sp|Q9BY12|ZN291_HUMAN  Zinc finger protein 291                     32   3.3  

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
           (SAP 62) (SF3a66)
          Length = 464

 Score =  348 bits (894), Expect = 9e-96
 Identities = 163/217 (75%), Positives = 188/217 (86%)
 Frame = +3

Query: 33  MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDIEKDPYFMRNHLGTYECKLCL 212
           MD+QHRPGGKTGSGGVAS S++NRDR++RL Q+A++ IDI KDPYFM+NHLG+YECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 213 TLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEHKKFVKIGRPGYKVT 392
           TLHNN  SY+ HTQGKKHQ+NL +RAA++AKE P QP  +K KVE KKFVKIGRPGYKVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query: 393 KQRDPETNQQSMLFQIDYPEISESTGAVPRHRFMSAYEQHIEPPDRHWQYLLIAAEPYET 572
           KQRD E  QQS+LFQIDYPEI+E  G +PRHRFMSAYEQ IEPPDR WQYLL+AAEPYET
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAE--GIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYET 178

Query: 573 IAFKVPSREIDKDPKKLWTYWNRHSKQFYLQFAYKQD 683
           IAFKVPSREIDK   K WT+WNR +KQF+LQF +K +
Sbjct: 179 IAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
           (SAP 62) (SF3a66)
          Length = 475

 Score =  320 bits (819), Expect = 5e-87
 Identities = 155/217 (71%), Positives = 179/217 (82%)
 Frame = +3

Query: 33  MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDIEKDPYFMRNHLGTYECKLCL 212
           MD+QHRPGGKTGSGGVAS S++NRDR++RL Q+A++ IDI KDPYFM+NHLG+YECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 213 TLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEHKKFVKIGRPGYKVT 392
           TLHNN  SY+ HTQGKKHQ+NL +RAA++AKE P QP  ++ KVE KKFVKIGRPGYKVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVT 120

Query: 393 KQRDPETNQQSMLFQIDYPEISESTGAVPRHRFMSAYEQHIEPPDRHWQYLLIAAEPYET 572
           KQRD E  QQS+LFQIDYPEI+E  G +PRHRFMSAYEQ IEPPDR WQYLL+AAEPYET
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAE--GIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYET 178

Query: 573 IAFKVPSREIDKDPKKLWTYWNRHSKQFYLQFAYKQD 683
           IAFKVPSREIDK             K F+LQF +K +
Sbjct: 179 IAFKVPSREIDK----------AEGKFFFLQFHFKME 205

>sp|Q07350|PRP11_YEAST Pre-mRNA splicing factor PRP11
          Length = 266

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 43/259 (16%)
 Frame = +3

Query: 33  MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDI------EKD------PYFMR 176
           M+Y    G K G GG+AS S  N  R+  +  +     ++      EKD      PY  +
Sbjct: 1   MNYLEGVGSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK 60

Query: 177 NHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKEN------PIQPILDKA 338
           NH G   CKLC T+H +  S   H  GKKH  N+ +R     K +             + 
Sbjct: 61  NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ 120

Query: 339 K-VEHKKFVKIGR--PGYKVTKQRDPETNQQSMLFQIDY-PEISEST-------GAVPRH 485
           K +E K+ +K     P  K+   ++P+     +  Q++Y  E+ E++          P  
Sbjct: 121 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLI 180

Query: 486 RFMSAYEQHIEPPDRHWQYLLIAAEPYETIAFKVPSREI------DKDP--------KKL 623
           R +S  E   +   +  ++L+IA EP+E IA ++P  EI      D D          K 
Sbjct: 181 RIVSGLELS-DTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKK 239

Query: 624 WTYWNRHSKQFYLQFAYKQ 680
            T+W+  SK +Y+QF +KQ
Sbjct: 240 CTFWDAISKLYYVQFFFKQ 258

>sp|O88466|ZF106_MOUSE Zinc finger protein 106 (Zfp-106) (Zinc finger protein 474) (H3a
           minor histocompatibility antigen) (Son of insulin
           receptor mutant)
          Length = 1888

 Score = 37.0 bits (84), Expect = 0.079
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
 Frame = +3

Query: 189 TYECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAE-QAKENPIQPILDKAKVEHKKFVK 365
           ++EC++C        +Y  H  G+ H+ N+  +  E   KE   +   D      K+ V+
Sbjct: 42  SHECRVCRVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKEEEEEEYFD------KELVQ 95

Query: 366 IGRPGYKVTKQRDPETNQQSMLFQIDYPEISESTGAVP---RHRFMSAYEQHIEPPDRHW 536
           + +   + ++Q +P +N Q +      P+       +P   R  +      H  PP R W
Sbjct: 96  LIQERKEQSRQDEPPSNSQEVNSDDRQPQWRRE-DRIPYQDRESYSQPPRHHRGPPQRDW 154

Query: 537 QY 542
           ++
Sbjct: 155 KW 156

>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
          Length = 294

 Score = 35.0 bits (79), Expect = 0.30
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
           Y CK C  + N+ E Y  H  G KH++   K       + P+Q
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQ 281

>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
          Length = 294

 Score = 35.0 bits (79), Expect = 0.30
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
           Y CK C  + N+ E Y  H  G KH++   K  A    + P+Q
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQ 281

>sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346
          Length = 310

 Score = 35.0 bits (79), Expect = 0.30
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
           Y CK C  + N+ E Y  H  G KH++   K  A    + P+Q
Sbjct: 255 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQ 297

>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2
 sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin type 2
          Length = 199

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
 Frame = +3

Query: 174 RNHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNL------QKRAAEQAKENPIQPILDK 335
           ++ +G Y C +C  +  +  +++ H  GKKHQ NL      ++   +Q K+   +  ++K
Sbjct: 74  QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKK---RFEVNK 130

Query: 336 AKVEHKK 356
            K+E K+
Sbjct: 131 KKMEEKQ 137

>sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog (Zfp-106) (Zinc finger protein 474)
          Length = 1883

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
 Frame = +3

Query: 144 IDIEKDPYFMRNHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNL--QKRAAEQAKENPI 317
           I+    P F R+   ++EC++C        +Y  H  G+ H+ N+  Q+R  +   E   
Sbjct: 6   IECPSSPSFPRDI--SHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEE 63

Query: 318 QPILDKAKVEHKKFVKIGRPGYKVTKQRDPETNQQSMLFQIDYPEISESTGAVP---RHR 488
           +   D      K+ +++ +   + ++Q +P  + Q +      P+       +P   R  
Sbjct: 64  EDYFD------KELIQLIKQRKEQSRQDEPSNSNQEINSDDRRPQWRRE-DRIPYQDRES 116

Query: 489 FMSAYEQHIEPPDRHWQY 542
           +      H  PP R W++
Sbjct: 117 YSQPAWHHRGPPQRDWKW 134

>sp|Q9BY12|ZN291_HUMAN Zinc finger protein 291
          Length = 1399

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 195 ECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEH---KKFV 362
           +C LC  L ++     +H +G+KHQ  +++  + Q +E      L   +VEH   KK++
Sbjct: 792 QCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRE------LSDEEVEHLSLKKYI 844

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,820,994
Number of Sequences: 369166
Number of extensions: 2271853
Number of successful extensions: 6857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6844
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00435

  1. Dr_sW_024_A15
  2. Dr_sW_011_G24