Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G24
(929 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 348 9e-96
sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceo... 320 5e-87
sp|Q07350|PRP11_YEAST Pre-mRNA splicing factor PRP11 83 1e-15
sp|O88466|ZF106_MOUSE Zinc finger protein 106 (Zfp-106) (Zi... 37 0.079
sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another... 35 0.30
sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another... 35 0.30
sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346 35 0.30
sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2 >gi|5278353... 33 1.5
sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog (Zfp-... 33 1.5
sp|Q9BY12|ZN291_HUMAN Zinc finger protein 291 32 3.3
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 348 bits (894), Expect = 9e-96
Identities = 163/217 (75%), Positives = 188/217 (86%)
Frame = +3
Query: 33 MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDIEKDPYFMRNHLGTYECKLCL 212
MD+QHRPGGKTGSGGVAS S++NRDR++RL Q+A++ IDI KDPYFM+NHLG+YECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 213 TLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEHKKFVKIGRPGYKVT 392
TLHNN SY+ HTQGKKHQ+NL +RAA++AKE P QP +K KVE KKFVKIGRPGYKVT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 393 KQRDPETNQQSMLFQIDYPEISESTGAVPRHRFMSAYEQHIEPPDRHWQYLLIAAEPYET 572
KQRD E QQS+LFQIDYPEI+E G +PRHRFMSAYEQ IEPPDR WQYLL+AAEPYET
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAE--GIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYET 178
Query: 573 IAFKVPSREIDKDPKKLWTYWNRHSKQFYLQFAYKQD 683
IAFKVPSREIDK K WT+WNR +KQF+LQF +K +
Sbjct: 179 IAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 475
Score = 320 bits (819), Expect = 5e-87
Identities = 155/217 (71%), Positives = 179/217 (82%)
Frame = +3
Query: 33 MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDIEKDPYFMRNHLGTYECKLCL 212
MD+QHRPGGKTGSGGVAS S++NRDR++RL Q+A++ IDI KDPYFM+NHLG+YECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 213 TLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEHKKFVKIGRPGYKVT 392
TLHNN SY+ HTQGKKHQ+NL +RAA++AKE P QP ++ KVE KKFVKIGRPGYKVT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVT 120
Query: 393 KQRDPETNQQSMLFQIDYPEISESTGAVPRHRFMSAYEQHIEPPDRHWQYLLIAAEPYET 572
KQRD E QQS+LFQIDYPEI+E G +PRHRFMSAYEQ IEPPDR WQYLL+AAEPYET
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAE--GIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYET 178
Query: 573 IAFKVPSREIDKDPKKLWTYWNRHSKQFYLQFAYKQD 683
IAFKVPSREIDK K F+LQF +K +
Sbjct: 179 IAFKVPSREIDK----------AEGKFFFLQFHFKME 205
>sp|Q07350|PRP11_YEAST Pre-mRNA splicing factor PRP11
Length = 266
Score = 83.2 bits (204), Expect = 1e-15
Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 43/259 (16%)
Frame = +3
Query: 33 MDYQHRPGGKTGSGGVASFSDANRDRKDRLMQIAMDVIDI------EKD------PYFMR 176
M+Y G K G GG+AS S N R+ + + ++ EKD PY +
Sbjct: 1 MNYLEGVGSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK 60
Query: 177 NHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKEN------PIQPILDKA 338
NH G CKLC T+H + S H GKKH N+ +R K + +
Sbjct: 61 NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ 120
Query: 339 K-VEHKKFVKIGR--PGYKVTKQRDPETNQQSMLFQIDY-PEISEST-------GAVPRH 485
K +E K+ +K P K+ ++P+ + Q++Y E+ E++ P
Sbjct: 121 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLI 180
Query: 486 RFMSAYEQHIEPPDRHWQYLLIAAEPYETIAFKVPSREI------DKDP--------KKL 623
R +S E + + ++L+IA EP+E IA ++P EI D D K
Sbjct: 181 RIVSGLELS-DTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKK 239
Query: 624 WTYWNRHSKQFYLQFAYKQ 680
T+W+ SK +Y+QF +KQ
Sbjct: 240 CTFWDAISKLYYVQFFFKQ 258
>sp|O88466|ZF106_MOUSE Zinc finger protein 106 (Zfp-106) (Zinc finger protein 474) (H3a
minor histocompatibility antigen) (Son of insulin
receptor mutant)
Length = 1888
Score = 37.0 bits (84), Expect = 0.079
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +3
Query: 189 TYECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAE-QAKENPIQPILDKAKVEHKKFVK 365
++EC++C +Y H G+ H+ N+ + E KE + D K+ V+
Sbjct: 42 SHECRVCRVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKEEEEEEYFD------KELVQ 95
Query: 366 IGRPGYKVTKQRDPETNQQSMLFQIDYPEISESTGAVP---RHRFMSAYEQHIEPPDRHW 536
+ + + ++Q +P +N Q + P+ +P R + H PP R W
Sbjct: 96 LIQERKEQSRQDEPPSNSQEVNSDDRQPQWRRE-DRIPYQDRESYSQPPRHHRGPPQRDW 154
Query: 537 QY 542
++
Sbjct: 155 KW 156
>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 35.0 bits (79), Expect = 0.30
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
Y CK C + N+ E Y H G KH++ K + P+Q
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQ 281
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 35.0 bits (79), Expect = 0.30
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
Y CK C + N+ E Y H G KH++ K A + P+Q
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQ 281
>sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346
Length = 310
Score = 35.0 bits (79), Expect = 0.30
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 192 YECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQ 320
Y CK C + N+ E Y H G KH++ K A + P+Q
Sbjct: 255 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQ 297
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2
sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin type 2
Length = 199
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = +3
Query: 174 RNHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNL------QKRAAEQAKENPIQPILDK 335
++ +G Y C +C + + +++ H GKKHQ NL ++ +Q K+ + ++K
Sbjct: 74 QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKK---RFEVNK 130
Query: 336 AKVEHKK 356
K+E K+
Sbjct: 131 KKMEEKQ 137
>sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog (Zfp-106) (Zinc finger protein 474)
Length = 1883
Score = 32.7 bits (73), Expect = 1.5
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Frame = +3
Query: 144 IDIEKDPYFMRNHLGTYECKLCLTLHNNPESYMTHTQGKKHQSNL--QKRAAEQAKENPI 317
I+ P F R+ ++EC++C +Y H G+ H+ N+ Q+R + E
Sbjct: 6 IECPSSPSFPRDI--SHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEE 63
Query: 318 QPILDKAKVEHKKFVKIGRPGYKVTKQRDPETNQQSMLFQIDYPEISESTGAVP---RHR 488
+ D K+ +++ + + ++Q +P + Q + P+ +P R
Sbjct: 64 EDYFD------KELIQLIKQRKEQSRQDEPSNSNQEINSDDRRPQWRRE-DRIPYQDRES 116
Query: 489 FMSAYEQHIEPPDRHWQY 542
+ H PP R W++
Sbjct: 117 YSQPAWHHRGPPQRDWKW 134
>sp|Q9BY12|ZN291_HUMAN Zinc finger protein 291
Length = 1399
Score = 31.6 bits (70), Expect = 3.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 195 ECKLCLTLHNNPESYMTHTQGKKHQSNLQKRAAEQAKENPIQPILDKAKVEH---KKFV 362
+C LC L ++ +H +G+KHQ +++ + Q +E L +VEH KK++
Sbjct: 792 QCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRE------LSDEEVEHLSLKKYI 844
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,820,994
Number of Sequences: 369166
Number of extensions: 2271853
Number of successful extensions: 6857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6844
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)