DrC_00385
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00385 (894 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q8ET01|KHSE_OCEIH Homoserine kinase (HSK) (HK) 34 0.63 sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein A... 32 1.8 sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase ... 32 2.4 sp|Q6PAL8|RA6I1_MOUSE Rab6-interacting protein 1 (Rab6IP1) 31 5.3 sp|Q6IQ26|RA6I1_HUMAN Rab6-interacting protein 1 (Rab6IP1) 31 5.3 sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 prote... 30 7.0 sp|Q9TSX8|VNN1_CANFA Pantetheinase precursor (Pantetheine h... 30 7.0 sp|Q92A83|HIS8_LISIN Histidinol-phosphate aminotransferase ... 30 9.1 sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase (GPI) (P... 30 9.1
>sp|Q8ET01|KHSE_OCEIH Homoserine kinase (HSK) (HK) Length = 294 Score = 33.9 bits (76), Expect = 0.63 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%) Frame = +1 Query: 34 VSRGCATNSFRSNIVSKLKSISN---------DYKTASKELVESITANPFRSLL 168 VSR C +S+ + +K +ISN DYK A K + E + PFRS L Sbjct: 172 VSRNCLPDSYNRDYAAKASAISNLTIAALYSKDYKLAGKLMEEDLFHEPFRSEL 225
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 Length = 1424 Score = 32.3 bits (72), Expect = 1.8 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = +2 Query: 557 SMQTSDSVQNDNEEWEEIDSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYY 736 S ++S++++ + +E D E + + S L E P+N+ ++I S D + L +NL Y Sbjct: 1056 SPRSSEAIKPSQYDDDETDMEYLKVTDISHLMELPQNLQSLHIDSCDGLTSLPENLTESY 1115
>sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) Length = 360 Score = 32.0 bits (71), Expect = 2.4 Identities = 14/63 (22%), Positives = 32/63 (50%) Frame = +1 Query: 88 KSISNDYKTASKELVESITANPFRSLLSSVILTSFGFVTYQKPSFQDYQHSLLVSAIDIW 267 K ++N Y+ +EL+ + + LL+ V+L + P+F Y+ + L+ ++ Sbjct: 71 KEVTNFYQLEEEELIFTAGVDELIELLTRVLLDTTKNTVMATPTFVQYRQNALIEGAEVR 130 Query: 268 DVP 276 ++P Sbjct: 131 EIP 133
>sp|Q6PAL8|RA6I1_MOUSE Rab6-interacting protein 1 (Rab6IP1) Length = 1287 Score = 30.8 bits (68), Expect = 5.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 608 IDSENVFIRLPSDLKEFPENISFI 679 +D +N FI LP DL +FP + F+ Sbjct: 385 VDVDNHFIELPEDLPQFPNKLEFV 408
>sp|Q6IQ26|RA6I1_HUMAN Rab6-interacting protein 1 (Rab6IP1) Length = 1287 Score = 30.8 bits (68), Expect = 5.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 608 IDSENVFIRLPSDLKEFPENISFI 679 +D +N FI LP DL +FP + F+ Sbjct: 385 VDIDNHFIELPEDLPQFPNKLEFV 408
>sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 proteinase (N-terminal protein); Helper component proteinase (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein (CP)] Length = 3206 Score = 30.4 bits (67), Expect = 7.0 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +2 Query: 611 DSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYYYESV 748 D + V +RLP D FP+ + F + I +G N +SV Sbjct: 2228 DKDMVIVRLPKDFPPFPQRLQFRAPQEREKICLVGSNFQEKSIQSV 2273
>sp|Q9TSX8|VNN1_CANFA Pantetheinase precursor (Pantetheine hydrolase) (Vascular non-inflammatory molecule 1) (Vanin 1) (Tiff66) Length = 514 Score = 30.4 bits (67), Expect = 7.0 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = -2 Query: 626 KRFHYQFLPILHYHFELNPKSALITFHSSWLMSYSTMFLSRLIHRP 489 K FH + + P + I FHS+W M FL+ IH P Sbjct: 226 KDFHVDTIVFPTAWMNVLPHLSAIQFHSAWAMGMGVNFLASNIHHP 271
>sp|Q92A83|HIS8_LISIN Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) Length = 360 Score = 30.0 bits (66), Expect = 9.1 Identities = 13/63 (20%), Positives = 32/63 (50%) Frame = +1 Query: 88 KSISNDYKTASKELVESITANPFRSLLSSVILTSFGFVTYQKPSFQDYQHSLLVSAIDIW 267 K +++ Y+ +EL+ + + LL+ V+L + P+F Y+ + L+ ++ Sbjct: 71 KEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVR 130 Query: 268 DVP 276 ++P Sbjct: 131 EIP 133
>sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 525 Score = 30.0 bits (66), Expect = 9.1 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%) Frame = +2 Query: 596 EWEEIDSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYYYESVDGALMFFNY 775 EW+ +D F +L KE EN+ +I + +K +N Y G + +NY Sbjct: 2 EWKNLDKCTSFTQLQKAHKEQAENLKLADIFDTENSVKRVKN-----YSVKMGGNLKYNY 56 Query: 776 EV----DDTKRFLDDSKSNFKYFGKVEKVLNQNCCNT 874 D+ + L K K E +LN + NT Sbjct: 57 AAKPVNDEILKALQSLADEQKLIEKYELLLNGDFINT 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,527,541
Number of Sequences: 369166
Number of extensions: 1723966
Number of successful extensions: 4772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4771
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
