Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F21
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ET01|KHSE_OCEIH Homoserine kinase (HSK) (HK) 34 0.63
sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein A... 32 1.8
sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase ... 32 2.4
sp|Q6PAL8|RA6I1_MOUSE Rab6-interacting protein 1 (Rab6IP1) 31 5.3
sp|Q6IQ26|RA6I1_HUMAN Rab6-interacting protein 1 (Rab6IP1) 31 5.3
sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 prote... 30 6.9
sp|Q9TSX8|VNN1_CANFA Pantetheinase precursor (Pantetheine h... 30 6.9
sp|Q92A83|HIS8_LISIN Histidinol-phosphate aminotransferase ... 30 9.0
sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase (GPI) (P... 30 9.0
>sp|Q8ET01|KHSE_OCEIH Homoserine kinase (HSK) (HK)
Length = 294
Score = 33.9 bits (76), Expect = 0.63
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Frame = +1
Query: 34 VSRGCATNSFRSNIVSKLKSISN---------DYKTASKELVESITANPFRSLL 168
VSR C +S+ + +K +ISN DYK A K + E + PFRS L
Sbjct: 172 VSRNCLPDSYNRDYAAKASAISNLTIAALYSKDYKLAGKLMEEDLFHEPFRSEL 225
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460
Length = 1424
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 557 SMQTSDSVQNDNEEWEEIDSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYY 736
S ++S++++ + +E D E + + S L E P+N+ ++I S D + L +NL Y
Sbjct: 1056 SPRSSEAIKPSQYDDDETDMEYLKVTDISHLMELPQNLQSLHIDSCDGLTSLPENLTESY 1115
>sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 360
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +1
Query: 88 KSISNDYKTASKELVESITANPFRSLLSSVILTSFGFVTYQKPSFQDYQHSLLVSAIDIW 267
K ++N Y+ +EL+ + + LL+ V+L + P+F Y+ + L+ ++
Sbjct: 71 KEVTNFYQLEEEELIFTAGVDELIELLTRVLLDTTKNTVMATPTFVQYRQNALIEGAEVR 130
Query: 268 DVP 276
++P
Sbjct: 131 EIP 133
>sp|Q6PAL8|RA6I1_MOUSE Rab6-interacting protein 1 (Rab6IP1)
Length = 1287
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 608 IDSENVFIRLPSDLKEFPENISFI 679
+D +N FI LP DL +FP + F+
Sbjct: 385 VDVDNHFIELPEDLPQFPNKLEFV 408
>sp|Q6IQ26|RA6I1_HUMAN Rab6-interacting protein 1 (Rab6IP1)
Length = 1287
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 608 IDSENVFIRLPSDLKEFPENISFI 679
+D +N FI LP DL +FP + F+
Sbjct: 385 VDIDNHFIELPEDLPQFPNKLEFV 408
>sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3206
Score = 30.4 bits (67), Expect = 6.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 611 DSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYYYESV 748
D + V +RLP D FP+ + F + I +G N +SV
Sbjct: 2228 DKDMVIVRLPKDFPPFPQRLQFRAPQEREKICLVGSNFQEKSIQSV 2273
>sp|Q9TSX8|VNN1_CANFA Pantetheinase precursor (Pantetheine hydrolase) (Vascular
non-inflammatory molecule 1) (Vanin 1) (Tiff66)
Length = 514
Score = 30.4 bits (67), Expect = 6.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 626 KRFHYQFLPILHYHFELNPKSALITFHSSWLMSYSTMFLSRLIHRP 489
K FH + + P + I FHS+W M FL+ IH P
Sbjct: 226 KDFHVDTIVFPTAWMNVLPHLSAIQFHSAWAMGMGVNFLASNIHHP 271
>sp|Q92A83|HIS8_LISIN Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 360
Score = 30.0 bits (66), Expect = 9.0
Identities = 13/63 (20%), Positives = 32/63 (50%)
Frame = +1
Query: 88 KSISNDYKTASKELVESITANPFRSLLSSVILTSFGFVTYQKPSFQDYQHSLLVSAIDIW 267
K +++ Y+ +EL+ + + LL+ V+L + P+F Y+ + L+ ++
Sbjct: 71 KEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVR 130
Query: 268 DVP 276
++P
Sbjct: 131 EIP 133
>sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 525
Score = 30.0 bits (66), Expect = 9.0
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +2
Query: 596 EWEEIDSENVFIRLPSDLKEFPENISFINISSNDPILKLGQNLYNYYYESVDGALMFFNY 775
EW+ +D F +L KE EN+ +I + +K +N Y G + +NY
Sbjct: 2 EWKNLDKCTSFTQLQKAHKEQAENLKLADIFDTENSVKRVKN-----YSVKMGGNLKYNY 56
Query: 776 EV----DDTKRFLDDSKSNFKYFGKVEKVLNQNCCNT 874
D+ + L K K E +LN + NT
Sbjct: 57 AAKPVNDEILKALQSLADEQKLIEKYELLLNGDFINT 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,297,060
Number of Sequences: 369166
Number of extensions: 1719088
Number of successful extensions: 4772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4771
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)