DrC_00371
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00371 (1260 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 72 4e-12 sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein) 69 4e-11 sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-bin... 68 5e-11 sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 (Poly... 67 8e-11 sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 (Poly... 67 8e-11 sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein... 67 8e-11 sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 67 1e-10 sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 66 2e-10 sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 66 2e-10 sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protei... 64 7e-10
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) Length = 660 Score = 71.6 bits (174), Expect = 4e-12 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSC-----QLNSKECTAYVEFDNETSAKNALS-MN 166 +Y+ LP + E++L F +G+ S Q + C +V F+ +A +A+ MN Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290 Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346 GI +G + + A K+ ++ + + + + S+ + +++ N+ +VD+ L+ Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350 Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451 F GN+ +KV+ +P G +G+GFV + + EA Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEA 385
Score = 52.0 bits (123), Expect = 4e-06
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVS---CQLNSKECT--AYVEFDNETSAKNALSMN 166
++Y L VTE L +F++ VS C+ ++ AY+ F N A A+
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAM--- 106
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSR----PSQIFVGNIGSNVDEI 334
+A N+ + + + N D S IF+ N+ +++D
Sbjct: 107 ----------------EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNK 150
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAK 454
L F G I+ KV D G+ KGYGFV F E A+
Sbjct: 151 ALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQ 190
Score = 51.6 bits (122), Expect = 5e-06
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALS-MN 166
I+I L S+ + L F ++G +SC++ + +V+F+ E SA+ A+ +N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 167 GIEMGSTRIQINIAYCKASNF--KQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
G+ M ++ + +F +QE D EN R + ++V N+ + E L
Sbjct: 198 GMLMNDKQVFVG-------HFIRRQERARD-----ENTPTPRFTNVYVKNLPKEIGEDEL 245
Query: 341 EGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKLTPLKK 472
F G I V+RD G + +GFV F TEA + ++K
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNFEC-TEAAASAVEK 288
Score = 38.9 bits (89), Expect = 0.032
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 DDSRP-SQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
D + P S ++ G++ V E L F+H+ N++ +V RD + + GY ++ F + +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Score = 37.0 bits (84), Expect = 0.12
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Frame = +1
Query: 574 QDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTIKNIKAFPKNNQS-------FIN 726
+D + TP+ +TNV+V + + ++ L F KFG I + A +QS F+N
Sbjct: 219 RDENTPTPR-FTNVYVKNLPKEIGEDELRKTFGKFGVISS--AVVMRDQSGNSRCFGFVN 275
Query: 727 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKV--KFNRQPVKKPRK 879
+ EAAA+A+ +MNG L L A K + +++ KF ++ + + K
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK 328
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein) Length = 375 Score = 68.6 bits (166), Expect = 4e-11 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Frame = +2 Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNAL-SMN 166 T+Y+ L VTE +L +F G C SC++ S + +VEF A AL +MN Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 69 Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346 G ++ +++N A +S K D S +FVG++ + ++ Sbjct: 70 GRKILGKEVKVNWATTPSSQKK--------------DTSNHFHVFVGDLSPEITTEDIKS 115 Query: 347 GFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAK 454 F G I D +V++D GK KGYGFV+F ++ +A+ Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 152
Score = 63.9 bits (154), Expect = 9e-10
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
Frame = +1
Query: 457 NAIEKMNDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSL--QDILSETPKSYTNVFVTG- 627
NAI M + +I+ +W + L +D+++++ V+ G
Sbjct: 153 NAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGI 212
Query: 628 -ENVTQEMLEPLFVKFGTIKNIKAFPKNNQSFINYYSHEAAANAIYQMNGFWLDSVELKC 804
+T +++ F FG I I+ FP+ SF+ + +HE+AA+AI +NG ++ +KC
Sbjct: 213 ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 272
Query: 805 SWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSNVKTRQTYESNFDSGYGGLPQFQQSFI 984
W E P + K+F V Q + YG Q+ Q
Sbjct: 273 YWG--KESPD-----------------MTKNFQQVDYSQW--GQWSQVYGNPQQYGQYMA 311
Query: 985 NPYQEQPFPSYSLP 1026
N +Q P+ Y P
Sbjct: 312 NGWQVPPYGVYGQP 325
Score = 40.0 bits (92), Expect = 0.014
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +1
Query: 601 SYTNVFV--TGENVTQEMLEPLFVKFGTI------KNIKAFPKNNQSFINYYSHEAAANA 756
++ +VFV +T E ++ F FG I K++ F+++Y+ A NA
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154
Query: 757 IYQMNGFWLDSVELKCSWAIKSEKPSKKVKFN 852
I M G WL +++ +WA + K + N
Sbjct: 155 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Score = 38.1 bits (87), Expect = 0.054
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 631 NVTQEMLEPLFVKFGTIKNIKAFPKNNQS----FINYYSHEAAANAIYQMNGFWLDSVEL 798
+VT+ ++ LF + G K+ K ++ + F+ +Y H AA A+ MNG + E+
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 799 KCSWAIKSEKPSK 837
K +WA K
Sbjct: 79 KVNWATTPSSQKK 91
Score = 31.6 bits (70), Expect = 5.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 275 DDSRPSQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
DD +P ++VGN+ +V E+++ F +G K+I + Y FV F +A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDA 61
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1) (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 68.2 bits (165), Expect = 5e-11 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Frame = +2 Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL------NSKECTAYVEFDNETSAKNAL-S 160 T+Y+ L VTE +L +F G C +C++ N C +VEF A AL + Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC--FVEFHEHRHAAAALAA 65 Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340 MNG ++ +++N A +S Q+ S V +FVG++ + + Sbjct: 66 MNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDI 122 Query: 341 EGGFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAK 454 + F G I D +V++D GK KGYGFV+F ++ +A+ Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Score = 62.4 bits (150), Expect = 3e-09
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 4/236 (1%)
Frame = +1
Query: 457 NAIEKMNDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSLQ--DILSETPKSYTNVFVTG- 627
NAI++M + +I+ +W + L ++++++ S V+ G
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 628 -ENVTQEMLEPLFVKFGTIKNIKAFPKNNQSFINYYSHEAAANAIYQMNGFWLDSVELKC 804
+T++++ F FG I I+ FP SF+ + SHE+AA+AI +NG ++ +KC
Sbjct: 222 TSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 805 SWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSNVKTRQTYESNFDSGYGGLPQFQQSFI 984
W K+ PV++ + P+ + + YG Q Q
Sbjct: 282 YW-------GKETLDMINPVQQQNQIGYPQPY----------GQWGQWYGNAQQIGQYMP 324
Query: 985 NPYQEQPFPSYSLPAYPXXXXXXXXXXFTAARSQSKSIPNVQPLMGILAQPKPGLN 1152
N +Q +PAY F +S S P + P G+ QP G N
Sbjct: 325 NGWQ--------VPAYGMYGQAWNQQGFNQTQS---SAPWMGPNYGV--QPPQGQN 367
Score = 40.0 bits (92), Expect = 0.014
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 580 ILSETPKSYTNVFV--TGENVTQEMLEPLFVKFGTI------KNIKAFPKNNQSFINYYS 735
+ ++ +++ +VFV +T E ++ F FG I K++ F+++++
Sbjct: 97 VSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156
Query: 736 HEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSK 837
A NAI QM G WL +++ +WA + K
Sbjct: 157 KWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK 190
Score = 36.2 bits (82), Expect = 0.21
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 631 NVTQEMLEPLFVKFGTIKNIKAFP----KNNQSFINYYSHEAAANAIYQMNGFWLDSVEL 798
+VT+ ++ LF + G KN K + F+ ++ H AA A+ MNG + E+
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEV 76
Query: 799 KCSWAIKSEKPSK 837
K +WA K
Sbjct: 77 KVNWATTPSSQKK 89
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) Length = 382 Score = 67.4 bits (163), Expect = 8e-11 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNAL-SMNG 169 I+I L S+ L +F +G +SC++ N + AYV FD+ +A A+ MNG Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167 Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEGG 349 + + + ++ Y F +E + V D + + +FV NIG ++D+ L+ Sbjct: 168 VRLNNRQV-----YVGRFKFPEERAAE----VRTRDRATFTNVFVKNIGDDIDDEKLKEL 218 Query: 350 FEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAK 454 F G KVIRD GK KG+GFV + + A+ Sbjct: 219 FCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Score = 36.2 bits (82), Expect = 0.21
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 IFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDP-DGKPKGYGFVTFRSETEAK 454
++VG++ +V E +L F G + T++ RDP P GYG+V FR +A+
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
Score = 35.4 bits (80), Expect = 0.35
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 266 ENIDDSRPSQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRS 439
+ + S IF+ N+ ++D L F GNI+ KV+ D +G KGY +V F S
Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDS 154
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) Length = 382 Score = 67.4 bits (163), Expect = 8e-11 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNAL-SMNG 169 I+I L S+ L +F +G +SC++ N + AYV FD+ +A A+ MNG Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167 Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEGG 349 + + + ++ Y F +E + V D + + +FV NIG ++D+ L+ Sbjct: 168 VRLNNRQV-----YVGRFKFPEERAAE----VRTRDRATFTNVFVKNIGDDIDDEKLKEL 218 Query: 350 FEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAK 454 F G KVIRD GK KG+GFV + + A+ Sbjct: 219 FCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Score = 36.2 bits (82), Expect = 0.21
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 IFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDP-DGKPKGYGFVTFRSETEAK 454
++VG++ +V E +L F G + T++ RDP P GYG+V FR +A+
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
Score = 35.4 bits (80), Expect = 0.35
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 266 ENIDDSRPSQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRS 439
+ + S IF+ N+ ++D L F GNI+ KV+ D +G KGY +V F S
Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDS 154
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein TIA-1) Length = 386 Score = 67.4 bits (163), Expect = 8e-11 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Frame = +2 Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL------NSKECTAYVEFDNETSAKNAL-S 160 T+Y+ L VTE +L +F G C +C++ N C +VEF A AL + Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC--FVEFHEHRHAAAALAA 65 Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340 MNG ++ +++N A +S Q+ S V +FVG++ + + Sbjct: 66 MNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122 Query: 341 EGGFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAK 454 + F G I D +V++D GK KGYGFV+F ++ +A+ Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Score = 66.2 bits (160), Expect = 2e-10
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
Frame = +1
Query: 457 NAIEKMNDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSLQ--DILSETPKSYTNVFVTG- 627
NAI++M + +I+ +W + L +++S++ + V+ G
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGV 221
Query: 628 -ENVTQEMLEPLFVKFGTIKNIKAFPKNNQSFINYYSHEAAANAIYQMNGFWLDSVELKC 804
+T++++ F FG I I+ FP SF+ + SHE+AA+AI +NG ++ +KC
Sbjct: 222 TSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 805 SWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSNVKTRQTYESNF----DSGYGGLPQFQ 972
W ++ V+ Q P + + N + Y N G G P Q
Sbjct: 282 YWGKETLDMINPVQQQNQIGYPPTYGQWGQWYGNAQQIGQYVPNGWQVPAYGVYGQPWSQ 341
Query: 973 QSFINPYQEQPF--PSYSLP 1026
Q F P+ P+YS+P
Sbjct: 342 QGFNQTQSSAPWMGPNYSVP 361
Score = 40.4 bits (93), Expect = 0.011
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = +1
Query: 580 ILSETPKSYTNVFV--TGENVTQEMLEPLFVKFGTI------KNIKAFPKNNQSFINYYS 735
+ ++ + + +VFV +T E ++ F FG I K++ F+++++
Sbjct: 97 VSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156
Query: 736 HEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSN 906
A NAI QM G WL +++ +WA + + P+ K + + V+ +S N
Sbjct: 157 KWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPN 212
Score = 36.2 bits (82), Expect = 0.21
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 631 NVTQEMLEPLFVKFGTIKNIKAFP----KNNQSFINYYSHEAAANAIYQMNGFWLDSVEL 798
+VT+ ++ LF + G KN K + F+ ++ H AA A+ MNG + E+
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEV 76
Query: 799 KCSWAIKSEKPSK 837
K +WA K
Sbjct: 77 KVNWATTPSSQKK 89
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP) Length = 634 Score = 67.0 bits (162), Expect = 1e-10 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT-----AYVEFDNETSAKNAL-SMN 166 +Y+ +E L FE YG S ++ SKE +V F+ +A+ A+ ++N Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIF-----VGNIGSNVDE 331 G +MG + Y + K E Q + K E + R +F V N+ +D+ Sbjct: 245 GKDMGEGKS----LYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDD 300 Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451 L F GNI KV+ D +G+ KG+GFV F + +EA Sbjct: 301 DRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEA 340
Score = 52.0 bits (123), Expect = 4e-06
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALSM 163
++Y+ LP V E L F + G +S ++ T AYV F A+ AL
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILE 343
++ + I I + + ++ S +F+ N+ +D +
Sbjct: 63 MNFDLVRNK-PIRIMWSQRD--------------PSLRRSGVGNVFIKNLDRAIDNKAIY 107
Query: 344 GGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKLTPLKK 472
F GNI+ KV D G KGYGFV F +E EA T + K
Sbjct: 108 DTFSAFGNILSCKVATDEKGNSKGYGFVHFETE-EAANTSIDK 149
Score = 50.4 bits (119), Expect = 1e-05
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT-----AYVEFDNETSAKNALS-MN 166
++I L ++ + + F +G +SC++ + E +V F+ E +A ++ +N
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G+ + ++ + + ++E +K F + ++V N + D+ L+
Sbjct: 152 GMLLNGKKVYVG-KFIPRKEREKELGEKAKLF---------TNVYVKNFTEDFDDEKLKE 201
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
FE G I KV+ DGK KG+GFV F + TEA
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFET-TEA 235
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2) Length = 629 Score = 65.9 bits (159), Expect = 2e-10 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNAL-SMN 166 +Y+ L S T++DL + F YG S + + +V F+N A A+ S+N Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276 Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346 G + + A K+ + +N E D + S ++V N+ ++ + L+ Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336 Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451 F G + +KV+RDP+G KG GFV F + EA Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEA 371
Score = 57.8 bits (138), Expect = 7e-08
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALS-MN 166
I+I L S+ + L F ++G VSC++ + +V++ NE SA+ A+ +N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G+ + ++ + F + + DS + ++ + ++V N+ + + L+
Sbjct: 186 GMLLNDKQVYVG-------PFLRRQERDS-----TANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
F G I V++D +GK KG+GFV F + +A
Sbjct: 234 AFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268
Score = 54.3 bits (129), Expect = 7e-07
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 7/158 (4%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALS- 160
++Y+ L +VT+ L F G V+ ++ T YV F N A A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
+N I + I++ ++ S + S IF+ N+ ++D L
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPS----------------VRRSGAGNIFIKNLDESIDHKAL 140
Query: 341 EGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAK 454
F GNI+ KV D G+ KGYGFV + +E A+
Sbjct: 141 HDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQ 178
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 65.9 bits (159), Expect = 2e-10 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNALS-MNG 169 ++I L S+ + L F +G +SC++ N + A+V F+ + +A A+ MNG Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEGG 349 + + ++ + + + E +K F + +++ N G VD+ L+ Sbjct: 161 MLLNDRKVFVG-RFKSRKEREAELGAKAKEF---------TNVYIKNFGEEVDDESLKEL 210 Query: 350 FEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451 F G + KV+RDP+GK KG+GFV++ +A Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Score = 55.1 bits (131), Expect = 4e-07
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALSMNG 169
+YI V +E L +F +G +S ++ + +V ++ A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE--- 249
Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQ-----IFVGNIGSNVDEI 334
EM I I + + K E Q + K E + R S+ +++ N+ +D+
Sbjct: 250 -EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDE 308
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
L F G+I KV+ + DG+ KG+GFV F S EA
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEA 346
Score = 46.2 bits (108), Expect = 2e-04
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Frame = +1
Query: 460 AIEKMNDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSLQDILSETPKSYTNVFVT--GEN 633
AIEKMN +D K+ + + L K +TNV++ GE
Sbjct: 154 AIEKMNGMLLNDRKV------------FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 634 VTQEMLEPLFVKFGTIKNIKAFPKNNQS-----FINYYSHEAAANAIYQMNGFWLDSVEL 798
V E L+ LF +FG ++K N F++Y HE A A+ +MNG + +
Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 799 KCSWAIKSEKPSKKVKFNRQPVKKPR 876
A K + ++K + +K+ R
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQER 287
Score = 31.2 bits (69), Expect = 6.6
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 610 NVFVTG--ENVTQEMLEPLFVKFGTIKNIKAFPKNNQS----FINYYSHEAAANAIYQMN 771
NVF+ +++ + L F FG I + K N S F+++ + EAA AI +MN
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 159
Query: 772 GFWLD 786
G L+
Sbjct: 160 GMLLN 164
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 64.3 bits (155), Expect = 7e-10 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Frame = +2 Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKE---CTAY--VEFDNETSAKNAL-SMN 166 +Y+ L V+E+ L F +G VS + E C Y V FDN A+ A ++N Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346 G + GS + + A KA + + + E ++ S I+V N+ V E L Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322 Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451 F G I TK++ D GK KG+GFV F + EA Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEA 357
Score = 50.4 bits (119), Expect = 1e-05
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYG------LCVSCQLNSKECTAYVEFDNETSAKNALSM 163
++Y+ L SVTE L F + LC C Y F + A
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA------ 78
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPS---QIFVGNIGSNVDEI 334
N+A K +N +M + D+R + +FV N+ +V
Sbjct: 79 ------------NLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNA 126
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
+L+ F+ GNI+ KV DGK +GYGFV F E A
Sbjct: 127 VLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAA 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,977,689
Number of Sequences: 369166
Number of extensions: 2845232
Number of successful extensions: 8452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8293
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14528857050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
