Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_O04
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-bin... 87 3e-17
sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein... 87 6e-17
sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein) 86 1e-16
sp|P70318|TIAR_MOUSE Nucleolysin TIAR (TIA-1 related protein) 79 1e-14
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 78 3e-14
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 75 2e-13
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 74 4e-13
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 73 9e-13
sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protei... 72 2e-12
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 71 3e-12
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)
(p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
(p15-TIA-1)]
Length = 386
Score = 87.4 bits (215), Expect = 3e-17
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL------NSKECTAYVEFDNETSAKNALS- 160
T+Y+ L VTE +L +F G C +C++ N C +VEF A AL+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC--FVEFHEHRHAAAALAA 65
Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
MNG ++ +++N A +S Q+ S V +FVG++ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDI 122
Query: 341 EGGFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWG 517
+ F G I D +V++D GK KGYGFV+F ++ +A+NAI++M + +I+ +W
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Query: 518 XXXXXXXXXXXXXXXRSL--QDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ L ++++++ S V+ G +T++++ F FG I
Sbjct: 183 TRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 73.2 bits (178), Expect = 7e-13
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECTA------YVEFDNETSAKNALS-M 163
+++ L +T ED+ + F +G ++ T +V F N+ A+NA+ M
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSK--NFVENIDDSRPSQ--IFVGNIGSNVDE 331
G +G +I+ N A K K Y+ ++K ++ E ++ S PS ++ G + S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCS 511
++ F G I++ +V D KGY FV F S A +AI +N T +KC
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 512 WG 517
WG
Sbjct: 283 WG 284
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein TIA-1)
Length = 386
Score = 86.7 bits (213), Expect = 6e-17
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL------NSKECTAYVEFDNETSAKNALS- 160
T+Y+ L VTE +L +F G C +C++ N C +VEF A AL+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC--FVEFHEHRHAAAALAA 65
Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
MNG ++ +++N A +S Q+ S V +FVG++ + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 341 EGGFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWG 517
+ F G I D +V++D GK KGYGFV+F ++ +A+NAI++M + +I+ +W
Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Query: 518 XXXXXXXXXXXXXXXRSL--QDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ L +++S++ + V+ G +T++++ F FG I
Sbjct: 183 TRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 71.2 bits (173), Expect = 3e-12
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECTA------YVEFDNETSAKNALS-M 163
+++ L +T ED+ + F +G ++ T +V F N+ A+NA+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSK--NFVENIDDSRPSQ--IFVGNIGSNVDE 331
G +G +I+ N A K K Y+ ++K ++ E + S P+ ++ G + S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCS 511
++ F G I++ +V D KGY FV F S A +AI +N T +KC
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 512 WG 517
WG
Sbjct: 283 WG 284
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein)
Length = 375
Score = 85.5 bits (210), Expect = 1e-16
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 10/236 (4%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNALS-MN 166
T+Y+ L VTE +L +F G C SC++ S + +VEF A AL+ MN
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G ++ +++N A +S K D S +FVG++ + ++
Sbjct: 70 GRKILGKEVKVNWATTPSSQKK--------------DTSNHFHVFVGDLSPEITTEDIKS 115
Query: 347 GFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXX 523
F G I D +V++D GK KGYGFV+F ++ +A+NAI M + +I+ +W
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 524 XXXXXXXXXXXXXRSL--QDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ L +D+++++ V+ G +T +++ F FG I
Sbjct: 176 KPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231
Score = 67.0 bits (162), Expect = 5e-11
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECTA------YVEFDNETSAKNAL-SM 163
+++ L +T ED+ S F +G ++ T +V F N+ A+NA+ M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 164 NGIEMGSTRIQINIAYCK--ASNFKQEYQMDSKNFVENIDDSRPSQ--IFVGNIGSNVDE 331
G +G +I+ N A K A QE F + ++ S P ++ G I S + +
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCS 511
++ F G I++ +V + KGY FV F + A +AI +N T +KC
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 273
Query: 512 WG 517
WG
Sbjct: 274 WG 275
Score = 40.8 bits (94), Expect = 0.004
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +2
Query: 275 DDSRPSQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAK 454
DD +P ++VGN+ +V E+++ F +G K+I + Y FV F +A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAA 62
Query: 455 NAIEKMNDTFFHDEKIKCSW 514
A+ MN +++K +W
Sbjct: 63 AALAAMNGRKILGKEVKVNW 82
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR (TIA-1 related protein)
Length = 392
Score = 79.0 bits (193), Expect = 1e-14
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 27/253 (10%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQL---------------------NSKECTAY 118
T+Y+ L VTE +L +F G C SC++ S + +
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
Query: 119 VEFDNETSAKNALS-MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQ 295
VEF A AL+ MNG ++ +++N A +S K D S
Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--------------DTSNHFH 115
Query: 296 IFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRD-PDGKPKGYGFVTFRSETEAKNAIEKM 472
+FVG++ + ++ F G I D +V++D GK KGYGFV+F ++ +A+NAI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 473 NDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSL--QDILSETPKSYTNVFVTG--ENVTQ 640
+ +I+ +W + L +D+++++ V+ G +T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 641 EMLEPLFVKFGTI 679
+++ F FG I
Sbjct: 236 QLMRQTFSPFGQI 248
Score = 67.0 bits (162), Expect = 5e-11
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECTA------YVEFDNETSAKNAL-SM 163
+++ L +T ED+ S F +G ++ T +V F N+ A+NA+ M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 164 NGIEMGSTRIQINIAYCK--ASNFKQEYQMDSKNFVENIDDSRPSQ--IFVGNIGSNVDE 331
G +G +I+ N A K A QE F + ++ S P ++ G I S + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCS 511
++ F G I++ +V + KGY FV F + A +AI +N T +KC
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 512 WG 517
WG
Sbjct: 291 WG 292
Score = 37.0 bits (84), Expect = 0.053
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Frame = +2
Query: 275 DDSRPSQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRD-PDGKPKG------------ 415
DD +P ++VGN+ +V E+++ F +G K+I + PD +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 416 ---YGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSW 514
Y FV F +A A+ MN +++K +W
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 99
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 77.8 bits (190), Expect = 3e-14
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSC-----QLNSKECTAYVEFDNETSAKNALS-MN 166
+Y+ LP + E++L F +G+ S Q + C +V F+ +A +A+ MN
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
GI +G + + A K+ ++ + + + + S+ + +++ N+ +VD+ L+
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
F GN+ +KV+ +P G +G+GFV + + EA A+ +MN
Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Score = 68.2 bits (165), Expect = 2e-11
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 11/237 (4%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVS---CQLNSKECT--AYVEFDNETSAKNALSMN 166
++Y L VTE L +F++ VS C+ ++ AY+ F N A A+
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAM--- 106
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSR----PSQIFVGNIGSNVDEI 334
+A N+ + + + N D S IF+ N+ +++D
Sbjct: 107 ----------------EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNK 150
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSW 514
L F G I+ KV D G+ KGYGFV F E A+ AI+K+N +D+++
Sbjct: 151 ALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV---- 206
Query: 515 GXXXXXXXXXXXXXXXRSLQDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+D + TP+ +TNV+V + + ++ L F KFG I
Sbjct: 207 -------FVGHFIRRQERARDENTPTPR-FTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Score = 60.8 bits (146), Expect = 3e-09
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 8/172 (4%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALS-MN 166
I+I L S+ + L F ++G +SC++ + +V+F+ E SA+ A+ +N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 167 GIEMGSTRIQINIAYCKASNF--KQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
G+ M ++ + +F +QE D EN R + ++V N+ + E L
Sbjct: 198 GMLMNDKQVFVG-------HFIRRQERARD-----ENTPTPRFTNVYVKNLPKEIGEDEL 245
Query: 341 EGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDE 496
F G I V+RD G + +GFV F A +A+EKMN D+
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDD 297
Score = 47.8 bits (112), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 DDSRP-SQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEA 451
D + P S ++ G++ V E L F+H+ N++ +V RD + + GY ++ F + +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 452 KNAIEKMNDTFFHDEKIK 505
A+E +N T D I+
Sbjct: 103 YRAMEALNYTPLFDRPIR 120
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 75.1 bits (183), Expect = 2e-13
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL----NSKECTAYVEFDNETSAKNALS-MNG 169
++I L S+ + L F +G +SC++ N + A+V F+ + +A A+ MNG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEGG 349
+ + ++ + + + E +K F + +++ N G VD+ L+
Sbjct: 161 MLLNDRKVFVG-RFKSRKEREAELGAKAKEF---------TNVYIKNFGEEVDDESLKEL 210
Query: 350 FEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
F G + KV+RDP+GK KG+GFV++ +A A+E+MN
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Score = 67.8 bits (164), Expect = 3e-11
Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 8/232 (3%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALSM 163
++Y+ L VTE L F G +S ++ T AYV F A+ AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILE 343
++ + I I + + ++ S +F+ N+ ++D L
Sbjct: 72 MNFDVIKGK-PIRIMWSQRD--------------PSLRKSGVGNVFIKNLDKSIDNKALY 116
Query: 344 GGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXX 523
F GNI+ KV+ D +G KGY FV F ++ A AIEKMN +D K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV------- 168
Query: 524 XXXXXXXXXXXXXRSLQDILSETPKSYTNVFVT--GENVTQEMLEPLFVKFG 673
+ + L K +TNV++ GE V E L+ LF +FG
Sbjct: 169 -----FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALSMNG 169
+YI V +E L +F +G +S ++ + +V ++ A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE--- 249
Query: 170 IEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQ-----IFVGNIGSNVDEI 334
EM I I + + K E Q + K E + R S+ +++ N+ +D+
Sbjct: 250 -EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDE 308
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
L F G+I KV+ + DG+ KG+GFV F S EA A+ +MN
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 73.9 bits (180), Expect = 4e-13
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 8/234 (3%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALSM 163
++Y+ L SV+E L IF G S ++ T AYV F++ + + A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILE 343
++ T I+ + C+ +++ + K IF+ N+ ++D L
Sbjct: 98 ---QLNYTPIKGRL--CRIMWSQRDPSLRKKG---------SGNIFIKNLHPDIDNKALY 143
Query: 344 GGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXX 523
F G+I+ +K+ D +GK KG+GFV F E AK AI+ +N + ++I +
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA---- 199
Query: 524 XXXXXXXXXXXXXRSLQDILSETPKSYTNVFVTGEN--VTQEMLEPLFVKFGTI 679
+ L ET YTN++V N T E + LF KFG I
Sbjct: 200 --------PHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Score = 60.8 bits (146), Expect = 3e-09
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSK-----ECTAYVEFDNETSAKNAL-SMN 166
+Y+ + T+E +F +G VS L + +V ++ A A+ ++N
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
E+ ++ + A K + +E + + +FV N+ +VD+ LE
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
F G I KV+R +GK KG+GFV F + EA AI + N
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.8 bits (138), Expect = 3e-08
Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 8/233 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT-----AYVEFDNETSAKNAL-SMN 166
I+I L + + L F +G +S ++ + E +V F+ E +AK A+ ++N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G+ + I + S +++ Q++ + + ++V NI S + +
Sbjct: 188 GMLLNGQEIYVAP---HLSRKERDSQLEETK-------AHYTNLYVKNINSETTDEQFQE 237
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXXX 526
F G I+ + +D DGK KG+GFV + +A A+E +ND+ + EK+ G
Sbjct: 238 LFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV--GRAQ 295
Query: 527 XXXXXXXXXXXXRSLQDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ N+FV ++V E LE F +GTI
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI 348
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 72.8 bits (177), Expect = 9e-13
Identities = 52/231 (22%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNALS-MN 166
I+I L S+ + L F ++G VSC++ + +V++ NE SA+ A+ +N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G+ + ++ + F + + DS + ++ + ++V N+ + + L+
Sbjct: 186 GMLLNDKQVYVG-------PFLRRQERDS-----TANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXXX 526
F G I V++D +GK KG+GFV F + +A A+E +N F D++
Sbjct: 234 AFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Query: 527 XXXXXXXXXXXXRSLQDILSETPKSYTNVFVTGENVTQEMLEPLFVKFGTI 679
++L++ + S V +++ E L+ +F FGT+
Sbjct: 294 SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 344
Score = 70.5 bits (171), Expect = 4e-12
Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 9/235 (3%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALS- 160
++Y+ L +VT+ L F G V+ ++ T YV F N A A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 161 MNGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIIL 340
+N I + I++ ++ S + S IF+ N+ ++D L
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPS----------------VRRSGAGNIFIKNLDESIDHKAL 140
Query: 341 EGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGX 520
F GNI+ KV D G+ KGYGFV + +E A+ AIEK+N +D+++
Sbjct: 141 HDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV------ 194
Query: 521 XXXXXXXXXXXXXXRSLQDILSETPKSYTNVFV--TGENVTQEMLEPLFVKFGTI 679
R +D + K +TNV+V E+ T + L+ F ++G I
Sbjct: 195 -------YVGPFLRRQERDSTANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKI 241
Score = 68.9 bits (167), Expect = 1e-11
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQL-----NSKECTAYVEFDNETSAKNAL-SMN 166
+Y+ L S T++DL + F YG S + + +V F+N A A+ S+N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G + + A K+ + +N E D + S ++V N+ ++ + L+
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
F G + +KV+RDP+G KG GFV F + EA A+ +++
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 (Poly(A)-binding
protein At2g36660) (PABP)
Length = 609
Score = 71.6 bits (174), Expect = 2e-12
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKE---CTAY--VEFDNETSAKNAL-SMN 166
+Y+ L V+E+ L F +G VS + E C Y V FDN A+ A ++N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G + GS + + A KA + + + E ++ S I+V N+ V E L
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKI 502
F G I TK++ D GK KG+GFV F + EA +A++ + FH + +
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
Score = 62.8 bits (151), Expect = 9e-10
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 11/237 (4%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYG------LCVSCQLNSKECTAYVEFDNETSAKNALSM 163
++Y+ L SVTE L F + LC C Y F + A
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA------ 78
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPS---QIFVGNIGSNVDEI 334
N+A K +N +M + D+R + +FV N+ +V
Sbjct: 79 ------------NLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNA 126
Query: 335 ILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSW 514
+L+ F+ GNI+ KV DGK +GYGFV F E A AI+ +N T D++I
Sbjct: 127 VLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI---- 182
Query: 515 GXXXXXXXXXXXXXXXRSLQDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ + E + YTN+++ +V++++L F +FG I
Sbjct: 183 ----------YVGKFMKKTDRVKPE--EKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Score = 46.6 bits (109), Expect = 7e-05
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = +2
Query: 290 SQIFVGNIGSNVDEIILEGGFEHLGNIIDTKVIRDPD-GKPKGYGFVTFRSETEAKNAIE 466
+ ++VG++ +V E IL F ++ ++ +D G+ YG+ F S +A AIE
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 467 KMNDTFFHDEKIKCSWGXXXXXXXXXXXXXXXRSLQDILSETPKSYTNVFVTG--ENVTQ 640
K N++ + + I+ W NVFV E+VT
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAP------------------DARRNGVGNVFVKNLPESVTN 125
Query: 641 EMLEPLFVKFGTI 679
+L+ +F KFG I
Sbjct: 126 AVLQDMFKKFGNI 138
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 71.2 bits (173), Expect = 3e-12
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT-----AYVEFDNETSAKNAL-SMN 166
+Y+ +E L FE YG S ++ SKE +V F+ +A+ A+ ++N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIF-----VGNIGSNVDE 331
G +MG + Y + K E Q + K E + R +F V N+ +D+
Sbjct: 245 GKDMGEGKS----LYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDD 300
Query: 332 IILEGGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
L F GNI KV+ D +G+ KG+GFV F + +EA A+ ++N
Sbjct: 301 DRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Score = 67.4 bits (163), Expect = 4e-11
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 8/234 (3%)
Frame = +2
Query: 2 TIYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT------AYVEFDNETSAKNALSM 163
++Y+ LP V E L F + G +S ++ T AYV F A+ AL
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 164 NGIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILE 343
++ + I I + + ++ S +F+ N+ +D +
Sbjct: 63 MNFDLVRNK-PIRIMWSQRD--------------PSLRRSGVGNVFIKNLDRAIDNKAIY 107
Query: 344 GGFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMNDTFFHDEKIKCSWGXX 523
F GNI+ KV D G KGYGFV F +E A +I+K+N + +K+
Sbjct: 108 DTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV------- 160
Query: 524 XXXXXXXXXXXXXRSLQDILSETPKSYTNVFVTG--ENVTQEMLEPLFVKFGTI 679
+ + L E K +TNV+V E+ E L+ F +G I
Sbjct: 161 -----YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI 209
Score = 55.8 bits (133), Expect = 1e-07
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Frame = +2
Query: 5 IYISCLPHSVTEEDLLSIFENYGLCVSCQLNSKECT-----AYVEFDNETSAKNALS-MN 166
++I L ++ + + F +G +SC++ + E +V F+ E +A ++ +N
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 167 GIEMGSTRIQINIAYCKASNFKQEYQMDSKNFVENIDDSRPSQIFVGNIGSNVDEIILEG 346
G+ + ++ + + ++E +K F + ++V N + D+ L+
Sbjct: 152 GMLLNGKKVYVG-KFIPRKEREKELGEKAKLF---------TNVYVKNFTEDFDDEKLKE 201
Query: 347 GFEHLGNIIDTKVIRDPDGKPKGYGFVTFRSETEAKNAIEKMN 475
FE G I KV+ DGK KG+GFV F + A+ A++ +N
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,596,782
Number of Sequences: 369166
Number of extensions: 1678371
Number of successful extensions: 5057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4869
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)