Planaria EST Database

DrC_00366

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00366
         (428 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12499|NOP58_YEAST  Nucleolar protein NOP58 (Nucleolar pr...   138   4e-33
sp|Q9QZ86|NOP5_RAT  Nucleolar protein NOP5 (Nucleolar protei...   138   6e-33
sp|Q9Y2X3|NOP5_HUMAN  Nucleolar protein NOP5 (Nucleolar prot...   137   7e-33
sp|O04658|Y5712_ARATH  Hypothetical protein At5g27120             135   4e-32
sp|Q9D6Z1|NOP56_MOUSE  Nucleolar protein Nop56 (Nucleolar pr...   130   1e-30
sp|Q5RA29|NOP56_PONPY  Nucleolar protein Nop56 (Nucleolar pr...   130   1e-30
sp|Q95K50|NOP56_MACFA  Nucleolar protein Nop56 (Nucleolar pr...   130   1e-30
sp|O00567|NOP56_HUMAN  Nucleolar protein Nop56 (Nucleolar pr...   130   1e-30
sp|Q21276|YZVL_CAEEL  Hypothetical protein K07C5.4 in chromo...   126   2e-29
sp|Q12460|SIK1_YEAST  SIK1 protein (Nucleolar protein NOP56)      122   2e-28

>sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar protein NOP5)
          Length = 511

 Score =  138 bits (348), Expect = 4e-33
 Identities = 66/108 (61%), Positives = 89/108 (82%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAH+G+L++L+K P+ST+QILGAEKALFRA+K+KH+TPKYGLLYHASLVGQA+ K
Sbjct: 295 VGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGK 354

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
           NKGK++R++A K  ++ R DAL E  + + ++G   RA VE  L+ LE
Sbjct: 355 NKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLE 402

>sp|Q9QZ86|NOP5_RAT Nucleolar protein NOP5 (Nucleolar protein 5) (Nopp140 associated
           protein)
          Length = 534

 Score =  138 bits (347), Expect = 6e-33
 Identities = 72/108 (66%), Positives = 90/108 (83%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L+NL+KH +STVQILGAEKALFRA+KS+ +TPKYGL+YHASLVGQ S K
Sbjct: 294 VGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPK 353

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
           +KGK+SR++A KTVLA R DA G  E++++ MGA  RA +E  L  LE
Sbjct: 354 HKGKISRMLAAKTVLAIRYDAFG--EDSSSAMGAENRAKLEARLRILE 399

>sp|Q9Y2X3|NOP5_HUMAN Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)
          Length = 529

 Score =  137 bits (346), Expect = 7e-33
 Identities = 71/108 (65%), Positives = 90/108 (83%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L+NL+KH +STVQILGAEKALFRA+KS+ +TPKYGL+YHASLVGQ S K
Sbjct: 294 VGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPK 353

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
           +KGK+SR++A KTVLA R DA G  E++++ MG   RA +E  L +LE
Sbjct: 354 HKGKISRMLAAKTVLAIRYDAFG--EDSSSAMGVENRAKLEARLRTLE 399

>sp|O04658|Y5712_ARATH Hypothetical protein At5g27120
          Length = 439

 Score =  135 bits (340), Expect = 4e-32
 Identities = 69/108 (63%), Positives = 88/108 (81%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLI+H G+L+NL+K P STVQILGAEKALFRA+K+KH TPKYGL++HAS+VGQA+ K
Sbjct: 292 VGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPK 351

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
           NKGK+SR +A K+VLA R DALG+S++ T  MG   R  +E  L +LE
Sbjct: 352 NKGKISRSLAAKSVLAIRCDALGDSQDNT--MGVENRLKLEARLRTLE 397

>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 580

 Score =  130 bits (327), Expect = 1e-30
 Identities = 64/111 (57%), Positives = 90/111 (81%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
           NKG++SR +ANK  +A+R+D    SE  T+  G  LR  VE+ L+  E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412

>sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score =  130 bits (327), Expect = 1e-30
 Identities = 64/111 (57%), Positives = 90/111 (81%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
           NKG++SR +ANK  +A+R+D    SE  T+  G  LR  VE+ L+  E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412

>sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score =  130 bits (327), Expect = 1e-30
 Identities = 64/111 (57%), Positives = 90/111 (81%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
           NKG++SR +ANK  +A+R+D    SE  T+  G  LR  VE+ L+  E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412

>sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score =  130 bits (327), Expect = 1e-30
 Identities = 64/111 (57%), Positives = 90/111 (81%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
           NKG++SR +ANK  +A+R+D    SE  T+  G  LR  VE+ L+  E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412

>sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromosome V
          Length = 486

 Score =  126 bits (316), Expect = 2e-29
 Identities = 65/110 (59%), Positives = 84/110 (76%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLI+HAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGLL+H+S +G+A  K
Sbjct: 310 VGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTK 369

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESG 330
           NKG++SR +ANK  +AARVD   E+  +T   G  LR  VE  L    SG
Sbjct: 370 NKGRVSRYLANKCSIAARVDCFSETPVST--YGEFLRQQVEDRLEYFTSG 417

>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
          Length = 504

 Score =  122 bits (307), Expect = 2e-28
 Identities = 63/111 (56%), Positives = 85/111 (76%)
 Frame = +1

Query: 1   LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
           +GARLI+HAG+L NLSK  +STVQILGAEKALFRA+K+K NTPKYGL+YH+  + +ASAK
Sbjct: 311 IGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAK 370

Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
           NKG++SR +ANK  +A+R+D    SEE +   G+ L+  VE+ L    +G+
Sbjct: 371 NKGRISRYLANKCSMASRID--NYSEEPSNVFGSVLKKQVEQRLEFYNTGK 419

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,533,178
Number of Sequences: 369166
Number of extensions: 669260
Number of successful extensions: 2482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00366

  1. Dr_sW_009_L08
  2. Dr_sW_019_M15