Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L08
(428 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar pr... 138 4e-33
sp|Q9QZ86|NOP5_RAT Nucleolar protein NOP5 (Nucleolar protei... 138 6e-33
sp|Q9Y2X3|NOP5_HUMAN Nucleolar protein NOP5 (Nucleolar prot... 137 7e-33
sp|O04658|Y5712_ARATH Hypothetical protein At5g27120 135 4e-32
sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar pr... 130 1e-30
sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar pr... 130 1e-30
sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar pr... 130 1e-30
sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar pr... 130 1e-30
sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromo... 126 2e-29
sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56) 122 2e-28
>sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar protein NOP5)
Length = 511
Score = 138 bits (348), Expect = 4e-33
Identities = 66/108 (61%), Positives = 89/108 (82%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAH+G+L++L+K P+ST+QILGAEKALFRA+K+KH+TPKYGLLYHASLVGQA+ K
Sbjct: 295 VGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGK 354
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
NKGK++R++A K ++ R DAL E + + ++G RA VE L+ LE
Sbjct: 355 NKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLE 402
>sp|Q9QZ86|NOP5_RAT Nucleolar protein NOP5 (Nucleolar protein 5) (Nopp140 associated
protein)
Length = 534
Score = 138 bits (347), Expect = 6e-33
Identities = 72/108 (66%), Positives = 90/108 (83%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L+NL+KH +STVQILGAEKALFRA+KS+ +TPKYGL+YHASLVGQ S K
Sbjct: 294 VGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPK 353
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
+KGK+SR++A KTVLA R DA G E++++ MGA RA +E L LE
Sbjct: 354 HKGKISRMLAAKTVLAIRYDAFG--EDSSSAMGAENRAKLEARLRILE 399
>sp|Q9Y2X3|NOP5_HUMAN Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)
Length = 529
Score = 137 bits (346), Expect = 7e-33
Identities = 71/108 (65%), Positives = 90/108 (83%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L+NL+KH +STVQILGAEKALFRA+KS+ +TPKYGL+YHASLVGQ S K
Sbjct: 294 VGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPK 353
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
+KGK+SR++A KTVLA R DA G E++++ MG RA +E L +LE
Sbjct: 354 HKGKISRMLAAKTVLAIRYDAFG--EDSSSAMGVENRAKLEARLRTLE 399
>sp|O04658|Y5712_ARATH Hypothetical protein At5g27120
Length = 439
Score = 135 bits (340), Expect = 4e-32
Identities = 69/108 (63%), Positives = 88/108 (81%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLI+H G+L+NL+K P STVQILGAEKALFRA+K+KH TPKYGL++HAS+VGQA+ K
Sbjct: 292 VGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPK 351
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLE 324
NKGK+SR +A K+VLA R DALG+S++ T MG R +E L +LE
Sbjct: 352 NKGKISRSLAAKSVLAIRCDALGDSQDNT--MGVENRLKLEARLRTLE 397
>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 580
Score = 130 bits (327), Expect = 1e-30
Identities = 64/111 (57%), Positives = 90/111 (81%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
NKG++SR +ANK +A+R+D SE T+ G LR VE+ L+ E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412
>sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 130 bits (327), Expect = 1e-30
Identities = 64/111 (57%), Positives = 90/111 (81%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
NKG++SR +ANK +A+R+D SE T+ G LR VE+ L+ E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412
>sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 130 bits (327), Expect = 1e-30
Identities = 64/111 (57%), Positives = 90/111 (81%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
NKG++SR +ANK +A+R+D SE T+ G LR VE+ L+ E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412
>sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 130 bits (327), Expect = 1e-30
Identities = 64/111 (57%), Positives = 90/111 (81%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLIAHAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGL++H++ +G+A+AK
Sbjct: 304 VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAK 363
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
NKG++SR +ANK +A+R+D SE T+ G LR VE+ L+ E+G+
Sbjct: 364 NKGRISRYLANKCSIASRIDCF--SEVPTSVFGEKLREQVEERLSFYETGE 412
>sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromosome V
Length = 486
Score = 126 bits (316), Expect = 2e-29
Identities = 65/110 (59%), Positives = 84/110 (76%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLI+HAG+L NL+K+P+STVQILGAEKALFRA+K++ NTPKYGLL+H+S +G+A K
Sbjct: 310 VGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTK 369
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESG 330
NKG++SR +ANK +AARVD E+ +T G LR VE L SG
Sbjct: 370 NKGRVSRYLANKCSIAARVDCFSETPVST--YGEFLRQQVEDRLEYFTSG 417
>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
Length = 504
Score = 122 bits (307), Expect = 2e-28
Identities = 63/111 (56%), Positives = 85/111 (76%)
Frame = +1
Query: 1 LGARLIAHAGTLMNLSKHPSSTVQILGAEKALFRAIKSKHNTPKYGLLYHASLVGQASAK 180
+GARLI+HAG+L NLSK +STVQILGAEKALFRA+K+K NTPKYGL+YH+ + +ASAK
Sbjct: 311 IGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAK 370
Query: 181 NKGKMSRIIANKTVLAARVDALGESEETTAEMGANLRAFVEKTLASLESGQ 333
NKG++SR +ANK +A+R+D SEE + G+ L+ VE+ L +G+
Sbjct: 371 NKGRISRYLANKCSMASRID--NYSEEPSNVFGSVLKKQVEQRLEFYNTGK 419
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,533,178
Number of Sequences: 369166
Number of extensions: 669260
Number of successful extensions: 2482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)