Planaria EST Database

DrC_00346

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00346
         (328 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BVF7|APH1A_MOUSE  Gamma-secretase subunit APH-1A (APH-1...    29   2.9  
sp|Q96BI3|APH1A_HUMAN  Gamma-secretase subunit APH-1A (APH-1...    29   2.9  
sp|P97430|ALK1_MOUSE  Antileukoproteinase 1 precursor (ALP) ...    29   3.8  
sp|P52981|GLGB_SYNY3  1,4-alpha-glucan branching enzyme (Gly...    29   3.8  
sp|P39358|YJHG_ECOLI  Hypothetical protein yjhG                    28   8.4  
sp|Q95JW2|CTL5_MACFA  Choline transporter-like protein 5 (So...    28   8.4  
sp|Q9UKP4|ATS7_HUMAN  ADAMTS-7 precursor (A disintegrin and ...    28   8.4  
sp|Q8NCS7|CTL5_HUMAN  Choline transporter-like protein 5 (So...    28   8.4  

>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 85  FGKCRRRNYWSIGLRSMSNGM*RGLQYLHAKY 180
           F  C RR YW++GL   S+ +  GL +L+  Y
Sbjct: 179 FDACERRRYWALGLVVGSHLLTSGLTFLNPWY 210

>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)
           (Presenilin-stabilization factor)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 85  FGKCRRRNYWSIGLRSMSNGM*RGLQYLHAKY 180
           F  C RR YW++GL   S+ +  GL +L+  Y
Sbjct: 179 FDACERRRYWALGLVVGSHLLTSGLTFLNPWY 210

>sp|P97430|ALK1_MOUSE Antileukoproteinase 1 precursor (ALP) (Secretory leukocyte protease
           inhibitor)
          Length = 131

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +2

Query: 59  VLLIIGMVILENVDGGIIGVLGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGT 238
           VLL +G++    V+GG    +  GAC          C++       E     TD  C G 
Sbjct: 11  VLLALGILAPWTVEGGKNDAIKIGACPAKKPAQ---CLKL------EKPQCRTDWECPGK 61

Query: 239 RLACVIACKAAAINP 283
           +  C  AC +  +NP
Sbjct: 62  QRCCQDACGSKCVNP 76

>sp|P52981|GLGB_SYNY3 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 770

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 43  NEICIGSINNWDGNFGKCRRRN--YWSIGLRSMSNGM*RGLQYLHAKYSY*NW 195
           N   +G  NNWDG   + R+RN   W + +  +  G          KY   NW
Sbjct: 153 NVSILGDFNNWDGRLHQMRKRNNMVWELFIPELGVG-------TSYKYEIKNW 198

>sp|P39358|YJHG_ECOLI Hypothetical protein yjhG
          Length = 655

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 101 GGIIGVLGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGTRL-ACV--IACKAA 271
           G I+ ++G G   T  EE Y +      +  G++    TDA  +G    AC+  +  +A 
Sbjct: 494 GDILVIIGVGPSGTGMEETYQVTSALKHLSYGKHVSLITDARFSGVSTGACIGHVGPEAL 553

Query: 272 AINPFTK 292
           A  P  K
Sbjct: 554 AGGPIGK 560

>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 (Solute carrier family 44 member
           5)
          Length = 717

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
 Frame = +2

Query: 32  ILIKMKFALVLLIIGMVILENVDG--------GIIGVLGYG 130
           ILI +  A+VL  I +++L  + G        G+IG++GYG
Sbjct: 245 ILIGLMIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYG 285

>sp|Q9UKP4|ATS7_HUMAN ADAMTS-7 precursor (A disintegrin and metalloproteinase with
           thrombospondin motifs 7) (ADAM-TS 7) (ADAM-TS7)
          Length = 997

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 119 LGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGTR 241
           L YGA    CE+  N+C   +   +G       DAA  GTR
Sbjct: 476 LQYGAYSAFCEDMDNVC-HTLWCSVGTTCHSKLDAAVDGTR 515

>sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 (Solute carrier family 44 member
           5)
          Length = 719

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
 Frame = +2

Query: 32  ILIKMKFALVLLIIGMVILENVDG--------GIIGVLGYG 130
           ILI +  A+VL  I +++L  + G        G+IG++GYG
Sbjct: 245 ILIGLTIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYG 285

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,172,554
Number of Sequences: 369166
Number of extensions: 604866
Number of successful extensions: 1412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00346

  1. Dr_sW_009_E06
  2. Dr_sW_026_D16