Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D16
(324 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A (APH-1... 29 2.9
sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A (APH-1... 29 2.9
sp|P97430|ALK1_MOUSE Antileukoproteinase 1 precursor (ALP) ... 29 3.8
sp|P52981|GLGB_SYNY3 1,4-alpha-glucan branching enzyme (Gly... 29 3.8
sp|P39358|YJHG_ECOLI Hypothetical protein yjhG 28 8.5
sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 (So... 28 8.5
sp|Q9UKP4|ATS7_HUMAN ADAMTS-7 precursor (A disintegrin and ... 28 8.5
sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 (So... 28 8.5
>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)
Length = 265
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 81 FGKCRRRNYWSIGLRSMSNGM*RGLQYLHAKY 176
F C RR YW++GL S+ + GL +L+ Y
Sbjct: 179 FDACERRRYWALGLVVGSHLLTSGLTFLNPWY 210
>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)
(Presenilin-stabilization factor)
Length = 265
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 81 FGKCRRRNYWSIGLRSMSNGM*RGLQYLHAKY 176
F C RR YW++GL S+ + GL +L+ Y
Sbjct: 179 FDACERRRYWALGLVVGSHLLTSGLTFLNPWY 210
>sp|P97430|ALK1_MOUSE Antileukoproteinase 1 precursor (ALP) (Secretory leukocyte protease
inhibitor)
Length = 131
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 55 VLLIIGMVILENVDGGIIGVLGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGT 234
VLL +G++ V+GG + GAC C++ E TD C G
Sbjct: 11 VLLALGILAPWTVEGGKNDAIKIGACPAKKPAQ---CLKL------EKPQCRTDWECPGK 61
Query: 235 RLACVIACKAAAINP 279
+ C AC + +NP
Sbjct: 62 QRCCQDACGSKCVNP 76
>sp|P52981|GLGB_SYNY3 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 770
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 39 NEICIGSINNWDGNFGKCRRRN--YWSIGLRSMSNGM*RGLQYLHAKYSY*NW 191
N +G NNWDG + R+RN W + + + G KY NW
Sbjct: 153 NVSILGDFNNWDGRLHQMRKRNNMVWELFIPELGVG-------TSYKYEIKNW 198
>sp|P39358|YJHG_ECOLI Hypothetical protein yjhG
Length = 655
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 97 GGIIGVLGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGTRL-ACV--IACKAA 267
G I+ ++G G T EE Y + + G++ TDA +G AC+ + +A
Sbjct: 494 GDILVIIGVGPSGTGMEETYQVTSALKHLSYGKHVSLITDARFSGVSTGACIGHVGPEAL 553
Query: 268 AINPFTK 288
A P K
Sbjct: 554 AGGPIGK 560
>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 (Solute carrier family 44 member
5)
Length = 717
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +1
Query: 28 ILIKMKFALVLLIIGMVILENVDG--------GIIGVLGYG 126
ILI + A+VL I +++L + G G+IG++GYG
Sbjct: 245 ILIGLMIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYG 285
>sp|Q9UKP4|ATS7_HUMAN ADAMTS-7 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 7) (ADAM-TS 7) (ADAM-TS7)
Length = 997
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 115 LGYGACQTACEEAYNICMQNIRIEIGENDDKTTDAACAGTR 237
L YGA CE+ N+C + +G DAA GTR
Sbjct: 476 LQYGAYSAFCEDMDNVC-HTLWCSVGTTCHSKLDAAVDGTR 515
>sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 (Solute carrier family 44 member
5)
Length = 719
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +1
Query: 28 ILIKMKFALVLLIIGMVILENVDG--------GIIGVLGYG 126
ILI + A+VL I +++L + G G+IG++GYG
Sbjct: 245 ILIGLTIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYG 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,990,880
Number of Sequences: 369166
Number of extensions: 600084
Number of successful extensions: 1402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)