Planaria EST Database

DrC_00343

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00343
         (789 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D1G1|RAB1B_MOUSE  Ras-related protein Rab-1B                 199   9e-51
sp|P01123|YPT1_YEAST  GTP-binding protein YPT1 (Rab GTPase Y...   199   9e-51
sp|Q9H0U4|RAB1B_HUMAN  Ras-related protein Rab-1B                 198   1e-50
sp|P10536|RAB1B_RAT  Ras-related protein Rab-1B                   198   1e-50
sp|P22125|RAB1_DISOM  Ras-related protein ORAB-1                  198   1e-50
sp|Q39571|YPTC1_CHLRE  GTP-binding protein YPTC1                  196   5e-50
sp|P62820|RAB1A_HUMAN  Ras-related protein Rab-1A (YPT1-rela...   196   5e-50
sp|P40392|RIC1_ORYSA  Ras-related protein RIC1                    196   8e-50
sp|P31584|YPTV1_VOLCA  GTP-binding protein yptV1                  196   8e-50
sp|Q52NJ2|RAB1A_PIG  Ras-related protein Rab-1A                   196   8e-50

>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
          Length = 201

 Score =  199 bits (505), Expect = 9e-51
 Identities = 99/180 (55%), Positives = 130/180 (72%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  S+ ++ +WL+E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K+DLT K+VV +   ++ AD     FLETSAK+   VE  F  MA +IK+       S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181

>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 (Rab GTPase YPT1) (Transport GTPase YPT1)
           (Protein YP2)
          Length = 206

 Score =  199 bits (505), Expect = 9e-51
 Identities = 99/174 (56%), Positives = 129/174 (74%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIG+S VGKS LL+RF+D+T+ + +I+TIGVDFK K +++D + +KLQI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRG+ GIIIVYDVT+  SF  +  WL+E   +    ++ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQ 531
           K DL +KRVV     ++ AD +   FLETSA D+  VED F  MAR+IKE  SQ
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175

>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
          Length = 201

 Score =  198 bits (504), Expect = 1e-50
 Identities = 99/180 (55%), Positives = 130/180 (72%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  S+ ++ +WL+E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K+DLT K+VV +   ++ AD     FLETSAK+   VE  F  MA +IK+       S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181

>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
          Length = 201

 Score =  198 bits (504), Expect = 1e-50
 Identities = 98/180 (54%), Positives = 130/180 (72%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRT+TS+YYRGA GII+VYDVT+  S+ ++ +WL+E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K+DLT K+VV +   ++ AD     FLETSAK+   VE  F  MA +IK+       S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181

>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
          Length = 202

 Score =  198 bits (504), Expect = 1e-50
 Identities = 101/187 (54%), Positives = 132/187 (70%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL+E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K DLT K+VV     ++ AD     FLETSAK+   VE  F  MA +IK+       S G
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGG 181

Query: 550 IKLTNAS 570
            + +N +
Sbjct: 182 SEKSNVN 188

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
          Length = 203

 Score =  196 bits (499), Expect = 5e-50
 Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + +++D +VIKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQ 531
           K+DLT K+VV     +  ADE    FLETSAK+   VE  F  MA +IK  M SQ
Sbjct: 122 KSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQ 176

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
 sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
 sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
 sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
          Length = 205

 Score =  196 bits (499), Expect = 5e-50
 Identities = 100/185 (54%), Positives = 131/185 (70%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 5   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 64

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL+E   +   N+  +LVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K DLT K+VV     ++ AD     FLETSAK+   VE  F  MA +IK+       + G
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 550 IKLTN 564
            + +N
Sbjct: 185 AEKSN 189

>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
          Length = 202

 Score =  196 bits (497), Expect = 8e-50
 Identities = 107/188 (56%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+++  ++I+TIGVDFK + ++ D + IKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQNQESK 546
           K DL E RVV+   G+ LADE    FLETSAKD   VE  F  MA +IK  M SQ +   
Sbjct: 122 KCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGR--- 178

Query: 547 GIKLTNAS 570
               TNAS
Sbjct: 179 ----TNAS 182

>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1
          Length = 203

 Score =  196 bits (497), Expect = 8e-50
 Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + +++D +VIKLQI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQI 61

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL E   +   N+  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGN 121

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQ 531
           K+DLT K+VV     +  ADE    FLETSAK+   VE  F  MA +IK  M SQ
Sbjct: 122 KSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQ 176

>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
          Length = 205

 Score =  196 bits (497), Expect = 8e-50
 Identities = 100/185 (54%), Positives = 131/185 (70%)
 Frame = +1

Query: 10  NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
           N +YDY FK+LLIGDS VGKS LL+RFAD+T+  ++I+TIGVDFK + I++D + IKLQI
Sbjct: 5   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 64

Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
           WDTAGQERFRTITS+YYRGA GII+VYDVT+  SF ++ +WL+E   +   N+  +LVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
           K DLT K+VV     ++ AD     FLETSAK+   VE  F  MA +IK+       + G
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 550 IKLTN 564
            + +N
Sbjct: 185 AEKSN 189

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,159,275
Number of Sequences: 369166
Number of extensions: 1497427
Number of successful extensions: 5425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5050
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00343

  1. Dr_sW_009_D13
  2. Dr_sW_009_H12