Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D13
(789 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 199 9e-51
sp|P01123|YPT1_YEAST GTP-binding protein YPT1 (Rab GTPase Y... 199 9e-51
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 198 1e-50
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 198 1e-50
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 198 1e-50
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 196 5e-50
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 196 5e-50
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 196 8e-50
sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 196 8e-50
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 196 8e-50
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 199 bits (505), Expect = 9e-51
Identities = 99/180 (55%), Positives = 130/180 (72%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ S+ ++ +WL+E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K+DLT K+VV + ++ AD FLETSAK+ VE F MA +IK+ S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 (Rab GTPase YPT1) (Transport GTPase YPT1)
(Protein YP2)
Length = 206
Score = 199 bits (505), Expect = 9e-51
Identities = 99/174 (56%), Positives = 129/174 (74%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIG+S VGKS LL+RF+D+T+ + +I+TIGVDFK K +++D + +KLQI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRG+ GIIIVYDVT+ SF + WL+E + ++ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQ 531
K DL +KRVV ++ AD + FLETSA D+ VED F MAR+IKE SQ
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 198 bits (504), Expect = 1e-50
Identities = 99/180 (55%), Positives = 130/180 (72%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ S+ ++ +WL+E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K+DLT K+VV + ++ AD FLETSAK+ VE F MA +IK+ S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 198 bits (504), Expect = 1e-50
Identities = 98/180 (54%), Positives = 130/180 (72%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRT+TS+YYRGA GII+VYDVT+ S+ ++ +WL+E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K+DLT K+VV + ++ AD FLETSAK+ VE F MA +IK+ S G
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 198 bits (504), Expect = 1e-50
Identities = 101/187 (54%), Positives = 132/187 (70%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL+E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K DLT K+VV ++ AD FLETSAK+ VE F MA +IK+ S G
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGG 181
Query: 550 IKLTNAS 570
+ +N +
Sbjct: 182 SEKSNVN 188
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 196 bits (499), Expect = 5e-50
Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + +++D +VIKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQ 531
K+DLT K+VV + ADE FLETSAK+ VE F MA +IK M SQ
Sbjct: 122 KSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQ 176
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 196 bits (499), Expect = 5e-50
Identities = 100/185 (54%), Positives = 131/185 (70%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 64
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL+E + N+ +LVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K DLT K+VV ++ AD FLETSAK+ VE F MA +IK+ + G
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 550 IKLTN 564
+ +N
Sbjct: 185 AEKSN 189
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 196 bits (497), Expect = 8e-50
Identities = 107/188 (56%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+++ ++I+TIGVDFK + ++ D + IKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQNQESK 546
K DL E RVV+ G+ LADE FLETSAKD VE F MA +IK M SQ +
Sbjct: 122 KCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGR--- 178
Query: 547 GIKLTNAS 570
TNAS
Sbjct: 179 ----TNAS 182
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1
Length = 203
Score = 196 bits (497), Expect = 8e-50
Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + +++D +VIKLQI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQI 61
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL E + N+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGN 121
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIK-EMKSQ 531
K+DLT K+VV + ADE FLETSAK+ VE F MA +IK M SQ
Sbjct: 122 KSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQ 176
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 196 bits (497), Expect = 8e-50
Identities = 100/185 (54%), Positives = 131/185 (70%)
Frame = +1
Query: 10 NRQYDYHFKILLIGDSAVGKSSLLIRFADNTFDSTFIATIGVDFKDKIIDIDNEVIKLQI 189
N +YDY FK+LLIGDS VGKS LL+RFAD+T+ ++I+TIGVDFK + I++D + IKLQI
Sbjct: 5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 64
Query: 190 WDTAGQERFRTITSTYYRGAAGIIIVYDVTNPRSFVSITKWLEEAQNHTGGNLVFMLVGN 369
WDTAGQERFRTITS+YYRGA GII+VYDVT+ SF ++ +WL+E + N+ +LVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 370 KTDLTEKRVVTSVDGRKLADEHHALFLETSAKDNKFVEDVFYQMARKIKEMKSQNQESKG 549
K DLT K+VV ++ AD FLETSAK+ VE F MA +IK+ + G
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 550 IKLTN 564
+ +N
Sbjct: 185 AEKSN 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,627,797
Number of Sequences: 369166
Number of extensions: 1477703
Number of successful extensions: 5296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4921
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)