Planarian EST Database

DrC_00316

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00316 TCGTTCTAACAATTCTCTTTTCACCATTTCTGGAATCAGAGTGCGAGCAACAGGAGTAAC TTCTTGAACAATTTCATCTATGGTTATATTAGAAATACCTTTATTCCTAATTAGCTCTTT ACAATGTTTTTTTAATTCCTCTCGCCATCCGCATTCTTCTAATCTTTGTCGTAATAGATC TTTTAACTTTTCTCGTTCACCACTTTGAACTAATTTTTGATTAATTTTATTTCTGATTTC TTCTTTTTCCATTACAAAATTATTTTTCAAAATCGTGGGAATGGAAGAACCACAACACGA AACTGAACACCAACCAACAGAAGAACCACAAGAAGTTCATGAAGGTGAAGGAGAAGCCGA ACATCATGAAACAGCGGAAAAATCAGAAGAACCGGCAGAATAATTTTTTGTTTTTAGTTG TCTCTTGATTTTATTTGCCGTTTTAATTTTTTTTTAATTTTTAATGGATTGGAAAAATTT GAGTTTTAAATAGTGGTAGTGGTTTACTATTACTAATAAATTGTTTTGATTTTTCTATTG AAAATTTAAATCGATACTATTGTTAGTTTCCTACGTAATTCAGAGGCGTTTTAATTTAAA TGTATTACAAATAACATTGTCGGAACAGTTTTTTTTGTAATGAAGCTTAATAATGATATG ACGAATCACAAAGTAATAAATACTTTGCTTTGGGAATAACATTAAGAGATAAAACTGTTT ATGTTGAAATAAATGTATTGCAATAGG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00316
         (747 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q87QB9|Y1231_VIBPA  Putative reductase VP1231                   33   1.1  
sp|Q9QXL2|KI21A_MOUSE  Kinesin family member 21A                   32   1.4  
sp|Q97IG3|SYA_CLOAB  Alanyl-tRNA synthetase (Alanine--tRNA l...    31   4.0  
sp|Q896M5|SYE_CLOTE  Glutamyl-tRNA synthetase (Glutamate--tR...    31   4.0  
sp|P29770|YNU1_SHIFL  Hypothetical 23.2 kDa protein in nuc 5...    30   5.3  
sp|Q58718|RAD50_METJA  DNA double-strand break repair rad50 ...    30   5.3  
sp|Q9WU62|INCE_MOUSE  Inner centromere protein                     30   5.3  
sp|P58107|EPIPL_HUMAN  Epiplakin (450 kDa epidermal antigen)       30   6.9  
sp|Q59021|YG27_METJA  Hypothetical UPF0179 protein MJ1627          30   6.9  
sp|P29374|ARI4A_HUMAN  AT-rich interactive domain-containing...    30   6.9

>sp|Q87QB9|Y1231_VIBPA Putative reductase VP1231
          Length = 400

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 243 EEIRNKINQKLV-QSGEREKLKDLLRQRLEECGWREELKKHCKEL 112
           E+I    +Q+L  + G   ++ D+ R RL++   RE++++HC+EL
Sbjct: 306 EQIYRMFSQRLYKEDGSAAEVDDMNRLRLDDWELREDIQQHCREL 350

>sp|Q9QXL2|KI21A_MOUSE Kinesin family member 21A
          Length = 1672

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = -1

Query: 246  KEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITIDEIV 67
            +  + + I QK+  S     +  LLRQR E    RE+L K  +++++  G  + ++  I+
Sbjct: 929  ERRVTDIIMQKMTISNMEADMNRLLRQREELTKRREKLSKRREKIVKESGEGDKSVANII 988

Query: 66   QEV 58
            +E+
Sbjct: 989  EEM 991

>sp|Q97IG3|SYA_CLOAB Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 881

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
 Frame = -1

Query: 246 KEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKEL-------IRNKGISN 88
           K++I NKINQ   +  E+EK  ++L+ +L   G+ E +    KE+          KGIS 
Sbjct: 729 KKDILNKINQYHSELKEKEKEINILKGKLAS-GFEENILSSVKEVSGVKYVASEVKGISG 787

Query: 87  ITIDEIVQEV 58
            T+ E+  +V
Sbjct: 788 DTLRELCDKV 797

>sp|Q896M5|SYE_CLOTE Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 488

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -1

Query: 249 EKEEIRNKINQKLVQSGE-------REKLKDLLRQRLEECGWREELKKHCKELIRNKGIS 91
           E++ I  +  QKL+  GE       +E+L D+LR+  E  G   +  KHC  L + +   
Sbjct: 88  ERKHIYTEYAQKLIDKGEAYYCFCTKERL-DMLRENSESLGRPHKYDKHCSHLSKEEIEE 146

Query: 90  NI 85
           N+
Sbjct: 147 NL 148

>sp|P29770|YNU1_SHIFL Hypothetical 23.2 kDa protein in nuc 5'region
          Length = 209

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -1

Query: 270 LKNNFVMEKEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGIS 91
           L + F  E +++R ++NQ      ER+KL D L +     G  EEL + C E +  +   
Sbjct: 111 LADTFTRENDQLRERVNQLEPMERERDKLADQLAEVKRRSG--EELNR-CMEKLTQRDNE 167

Query: 90  NITIDEIVQEVTPVARTL 37
            I   +  +E    A +L
Sbjct: 168 AIEARKQAKEAIERAASL 185

>sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ATPase
          Length = 1005

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 246 KEEIRNKINQKLVQSGER----EKLKDLLRQRLEECGWREELKKHCKELIRNK 100
           KE+I   +N K+++  +     E+    + Q+L+E  + EE  K  KEL  NK
Sbjct: 747 KEDIEIYLNNKILEVNKEINDIEERISYINQKLDEINYNEEEHKKIKELYENK 799

>sp|Q9WU62|INCE_MOUSE Inner centromere protein
          Length = 880

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -1

Query: 252 MEKEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITID 76
           M++ E   ++ ++ +Q    EK +   +QRL E   +EE  K  KE+   + + N+T+D
Sbjct: 705 MQEREKALRLQKERLQKELEEKKRKEEQQRLAEQQLQEEQAKKAKEVAAARKVLNMTVD 763

>sp|P58107|EPIPL_HUMAN Epiplakin (450 kDa epidermal antigen)
          Length = 5065

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -1

Query: 213  LVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITIDEIVQEVTPVARTLI 34
            LV++ ER+ L+   R      G R+++    ++L R + IS  T+DE+ Q  T V     
Sbjct: 1483 LVEAAERQPLQATFR------GLRKQVS--ARDLFRAQLISRKTLDELSQGTTTVKEVAE 1534

Query: 33   PEMVKREL 10
             + VKR L
Sbjct: 1535 MDSVKRSL 1542

>sp|Q59021|YG27_METJA Hypothetical UPF0179 protein MJ1627
          Length = 151

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 222 NQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNK 100
           N + ++ GE+ K+K +L +++  C +   LKK   EL+ NK
Sbjct: 112 NSEGIKEGEKYKIKQVLNEKI-NCPFGNSLKKVIVELVENK 151

>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A (ARID
           domain-containing protein 4A) (Retinoblastoma-binding
           protein 1) (RBBP-1)
          Length = 1257

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
 Frame = -1

Query: 252 MEK-EEIRNKINQKLVQSGEREKLKDLLRQRLE-------ECGWREELKKHCKEL--IRN 103
           MEK EE++ +  +     G R K KDL  + ++       E G    ++ H  EL  + N
Sbjct: 776 MEKAEEVKKEAEKSPKGKGRRSKTKDLSLEIIKISSFGQNEAGSEPHIEAHSLELSSLDN 835

Query: 102 KGISNITIDEIVQ 64
           K  S+ T DEI Q
Sbjct: 836 KNFSSATEDEIDQ 848

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,786,697
Number of Sequences: 369166
Number of extensions: 773755
Number of successful extensions: 3119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00316

Planaria EST Database

DrC_00316

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail