Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G21
(747 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q87QB9|Y1231_VIBPA Putative reductase VP1231 33 1.1
sp|Q9QXL2|KI21A_MOUSE Kinesin family member 21A 32 1.4
sp|Q97IG3|SYA_CLOAB Alanyl-tRNA synthetase (Alanine--tRNA l... 31 4.0
sp|Q896M5|SYE_CLOTE Glutamyl-tRNA synthetase (Glutamate--tR... 31 4.0
sp|P29770|YNU1_SHIFL Hypothetical 23.2 kDa protein in nuc 5... 30 5.3
sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ... 30 5.3
sp|Q9WU62|INCE_MOUSE Inner centromere protein 30 5.3
sp|P58107|EPIPL_HUMAN Epiplakin (450 kDa epidermal antigen) 30 6.9
sp|Q59021|YG27_METJA Hypothetical UPF0179 protein MJ1627 30 6.9
sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing... 30 6.9
>sp|Q87QB9|Y1231_VIBPA Putative reductase VP1231
Length = 400
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 505 EEIRNKINQKLV-QSGEREKLKDLLRQRLEECGWREELKKHCKEL 636
E+I +Q+L + G ++ D+ R RL++ RE++++HC+EL
Sbjct: 306 EQIYRMFSQRLYKEDGSAAEVDDMNRLRLDDWELREDIQQHCREL 350
>sp|Q9QXL2|KI21A_MOUSE Kinesin family member 21A
Length = 1672
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +1
Query: 502 KEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITIDEIV 681
+ + + I QK+ S + LLRQR E RE+L K +++++ G + ++ I+
Sbjct: 929 ERRVTDIIMQKMTISNMEADMNRLLRQREELTKRREKLSKRREKIVKESGEGDKSVANII 988
Query: 682 QEV 690
+E+
Sbjct: 989 EEM 991
>sp|Q97IG3|SYA_CLOAB Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 881
Score = 30.8 bits (68), Expect = 4.0
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +1
Query: 502 KEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKEL-------IRNKGISN 660
K++I NKINQ + E+EK ++L+ +L G+ E + KE+ KGIS
Sbjct: 729 KKDILNKINQYHSELKEKEKEINILKGKLAS-GFEENILSSVKEVSGVKYVASEVKGISG 787
Query: 661 ITIDEIVQEV 690
T+ E+ +V
Sbjct: 788 DTLRELCDKV 797
>sp|Q896M5|SYE_CLOTE Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 488
Score = 30.8 bits (68), Expect = 4.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 499 EKEEIRNKINQKLVQSGE-------REKLKDLLRQRLEECGWREELKKHCKELIRNKGIS 657
E++ I + QKL+ GE +E+L D+LR+ E G + KHC L + +
Sbjct: 88 ERKHIYTEYAQKLIDKGEAYYCFCTKERL-DMLRENSESLGRPHKYDKHCSHLSKEEIEE 146
Query: 658 NI 663
N+
Sbjct: 147 NL 148
>sp|P29770|YNU1_SHIFL Hypothetical 23.2 kDa protein in nuc 5'region
Length = 209
Score = 30.4 bits (67), Expect = 5.3
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 478 LKNNFVMEKEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGIS 657
L + F E +++R ++NQ ER+KL D L + G EEL + C E + +
Sbjct: 111 LADTFTRENDQLRERVNQLEPMERERDKLADQLAEVKRRSG--EELNR-CMEKLTQRDNE 167
Query: 658 NITIDEIVQEVTPVARTL 711
I + +E A +L
Sbjct: 168 AIEARKQAKEAIERAASL 185
>sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ATPase
Length = 1005
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 502 KEEIRNKINQKLVQSGER----EKLKDLLRQRLEECGWREELKKHCKELIRNK 648
KE+I +N K+++ + E+ + Q+L+E + EE K KEL NK
Sbjct: 747 KEDIEIYLNNKILEVNKEINDIEERISYINQKLDEINYNEEEHKKIKELYENK 799
>sp|Q9WU62|INCE_MOUSE Inner centromere protein
Length = 880
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 496 MEKEEIRNKINQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITID 672
M++ E ++ ++ +Q EK + +QRL E +EE K KE+ + + N+T+D
Sbjct: 705 MQEREKALRLQKERLQKELEEKKRKEEQQRLAEQQLQEEQAKKAKEVAAARKVLNMTVD 763
>sp|P58107|EPIPL_HUMAN Epiplakin (450 kDa epidermal antigen)
Length = 5065
Score = 30.0 bits (66), Expect = 6.9
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +1
Query: 535 LVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNKGISNITIDEIVQEVTPVARTLI 714
LV++ ER+ L+ R G R+++ ++L R + IS T+DE+ Q T V
Sbjct: 1483 LVEAAERQPLQATFR------GLRKQVS--ARDLFRAQLISRKTLDELSQGTTTVKEVAE 1534
Query: 715 PEMVKREL 738
+ VKR L
Sbjct: 1535 MDSVKRSL 1542
>sp|Q59021|YG27_METJA Hypothetical UPF0179 protein MJ1627
Length = 151
Score = 30.0 bits (66), Expect = 6.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 526 NQKLVQSGEREKLKDLLRQRLEECGWREELKKHCKELIRNK 648
N + ++ GE+ K+K +L +++ C + LKK EL+ NK
Sbjct: 112 NSEGIKEGEKYKIKQVLNEKI-NCPFGNSLKKVIVELVENK 151
>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A (ARID
domain-containing protein 4A) (Retinoblastoma-binding
protein 1) (RBBP-1)
Length = 1257
Score = 30.0 bits (66), Expect = 6.9
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 496 MEK-EEIRNKINQKLVQSGEREKLKDLLRQRLE-------ECGWREELKKHCKEL--IRN 645
MEK EE++ + + G R K KDL + ++ E G ++ H EL + N
Sbjct: 776 MEKAEEVKKEAEKSPKGKGRRSKTKDLSLEIIKISSFGQNEAGSEPHIEAHSLELSSLDN 835
Query: 646 KGISNITIDEIVQ 684
K S+ T DEI Q
Sbjct: 836 KNFSSATEDEIDQ 848
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,786,697
Number of Sequences: 369166
Number of extensions: 773755
Number of successful extensions: 3119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)