Planaria EST Database

DrC_00313

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00313
         (401 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99JX7|NXF1_MOUSE  Nuclear RNA export factor 1 (Tip-assoc...    33   0.27 
sp|O26780|ECR1_METTH  Probable exosome complex RNA-binding p...    32   0.61 
sp|O09105|NDF4_MOUSE  Neurogenic differentiation factor 4 (N...    30   1.4  
sp|Q9PHM5|RECN_CAMJE  DNA repair protein recN (Recombination...    30   1.8  
sp|Q8YJK3|HIS8_BRUME  Histidinol-phosphate aminotransferase ...    30   1.8  
sp|Q10259|SPC3_SCHPO  Probable microsomal signal peptidase s...    30   2.3  
sp|Q8FY98|HIS8_BRUSU  Histidinol-phosphate aminotransferase ...    29   3.0  
sp|Q05025|G3P_COTJA  Glyceraldehyde-3-phosphate dehydrogenas...    28   5.2  
sp|Q9S142|BFPB_ECO11  Outer membrane lipoprotein bfpB precur...    28   5.2  
sp|P75441|Y337_MYCPN  Hypothetical protein MG241 homolog (F1...    28   5.2  

>sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 (Tip-associating protein)
           (Tip-associated protein) (mRNA export factor TAP)
          Length = 618

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +2

Query: 101 ILDAIMNSVAGPFNMYSDYHTEYNKS---IKSGTTSSCALGNLHSVNKISHNNTSTITAA 271
           +L  I +  + PFN   ++H E  ++   ++  TT+S   G  H +    +   S I  A
Sbjct: 134 LLSMIQSKCSVPFNPI-EFHYENTRAHFFVEDATTASALKGVNHKIQDRENRRISIIINA 192

Query: 272 ATYDSYSKYQIDMQLSPHQLDRLKL 346
               S   Y +  +L P Q+++LKL
Sbjct: 193 ----SAPPYTVQNELKPEQIEQLKL 213

>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
          Length = 311

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 213 PKAQDEVVPDFIDLLYSVW*SEYILNGPATEFMMASKIFKKD 88
           PK  D V+ +  D+ +S+W  +  +N P T  + AS++F KD
Sbjct: 60  PKRGDVVIGEITDIRFSMWGLD--INSPYTGLLPASEVFGKD 99

>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 (NeuroD4) (Atonal protein
           homolog 3) (Helix-loop-helix protein mATH-3) (MATH3)
          Length = 330

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 122 SVAGPFNMYSDYHTEYNKS---IKSGTTSSCALGNLHSVNKISHNNTSTITAAATYDSYS 292
           S++G F++  D   +  KS   +   T++S + G++HS    +      +    +YDSYS
Sbjct: 257 SISGNFSLKQDGSPDLEKSYNFMPHYTSASLSSGHVHSTPFQTGTPRYDVPVDLSYDSYS 316

Query: 293 KYQIDMQLS 319
            + I  QL+
Sbjct: 317 HHSIGTQLN 325

>sp|Q9PHM5|RECN_CAMJE DNA repair protein recN (Recombination protein N)
          Length = 507

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
 Frame = +2

Query: 5   ILQKSFTLSSEEAIEILSFTKSHQTPNQSFLNILDAI-----------MNSVAGPFNMYS 151
           I +KS    S+  I+ LS  ++++  N+ FLN+LDA+           +      FN YS
Sbjct: 96  IAKKSLQNLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYS 155

Query: 152 DYHTEYN 172
               E N
Sbjct: 156 QISNELN 162

>sp|Q8YJK3|HIS8_BRUME Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
           transaminase)
          Length = 365

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = +2

Query: 29  SSEEAIEILSFTKSHQTPNQSF------LNILDAIMNSVAGPFNMYS 151
           S+E  + + +F+K H  P          L+I+DA MN + GPFNM S
Sbjct: 211 SNENVVMMRTFSKIHGLPGLRIGWIYAPLHIIDA-MNRIRGPFNMNS 256

>sp|Q10259|SPC3_SCHPO Probable microsomal signal peptidase subunit 3
          Length = 185

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 8   LQKSFTLSSEEAIEILSFTKSHQTPNQSFLNILDAIMNSVAGPFNMYSDYHTEYNKSIKS 187
           L  S++    E  +++ + K   +P +S + + D + N  A PFN YS+     N +   
Sbjct: 94  LVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHPFNEYSNQFEGKNATYTL 153

Query: 188 GTTSSCALGNL 220
             T S  +G L
Sbjct: 154 HWTVSPKMGFL 164

>sp|Q8FY98|HIS8_BRUSU Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
           transaminase)
          Length = 365

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +2

Query: 29  SSEEAIEILSFTKSHQTPNQSF------LNILDAIMNSVAGPFNMYS 151
           S+E  +   +F+K H  P          L+I+DA MN + GPFNM S
Sbjct: 211 SNENVVMTRTFSKIHGLPGLRIGWIYAPLHIIDA-MNRIRGPFNMNS 256

>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 122 SVAGPFNMYSDYHTEYNKSIKSGTTSSCALGNLHSVNKISHNNTSTITAAAT 277
           S   P  +    H +Y+KS+K  + +SC    L  + K+ H+N   +    T
Sbjct: 123 SADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174

>sp|Q9S142|BFPB_ECO11 Outer membrane lipoprotein bfpB precursor (Bundle-forming pilus B)
          Length = 552

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +2

Query: 50  ILSFTKSHQTPNQSFLNILDAIMNSVAGPFNMYSDYHTE----YNKSIKSGTTSSCALGN 217
           +L  +  HQ  + ++   L   ++ VA  +N+Y  Y +      N+  K  + S    G 
Sbjct: 155 LLEVSSEHQLMDVNYQGALSTFLDKVAANYNLYWTYESGRIAFSNEETKRFSISILPGGK 214

Query: 218 LHSVNKISHNNTSTITAAATYDSYS 292
             S N IS ++ S+  ++ +  S S
Sbjct: 215 YTSKNSISSDSNSSSGSSGSSGSSS 239

>sp|P75441|Y337_MYCPN Hypothetical protein MG241 homolog (F10_orf621)
          Length = 621

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 164 EYNKSIKSGTTSSCAL--GNLHSVNKISHNNTSTITAAATYDS-YSKYQIDMQLSPHQLD 334
           +Y+K  +   T+  +L   NL+S+N++ + +    TA+  YD  Y+K +  MQL    +D
Sbjct: 466 DYSKIFEQNRTNDPSLLRSNLNSINRLRYLSEYFRTASVKYDQLYTKVKEYMQLDQFLVD 525

Query: 335 RL 340
            +
Sbjct: 526 MI 527

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,244,532
Number of Sequences: 369166
Number of extensions: 686580
Number of successful extensions: 1856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00313

  1. Dr_sW_008_G01
  2. Dr_sW_008_N07
  3. Dr_sW_006_M24