Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G01
(398 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 (Tip-assoc... 33 0.27
sp|O26780|ECR1_METTH Probable exosome complex RNA-binding p... 32 0.59
sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 (N... 30 1.3
sp|Q9PHM5|RECN_CAMJE DNA repair protein recN (Recombination... 30 1.7
sp|Q8YJK3|HIS8_BRUME Histidinol-phosphate aminotransferase ... 30 1.7
sp|Q10259|SPC3_SCHPO Probable microsomal signal peptidase s... 30 2.3
sp|Q8FY98|HIS8_BRUSU Histidinol-phosphate aminotransferase ... 29 3.0
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 28 5.0
sp|Q9S142|BFPB_ECO11 Outer membrane lipoprotein bfpB precur... 28 5.0
sp|P75441|Y337_MYCPN Hypothetical protein MG241 homolog (F1... 28 5.0
>sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 (Tip-associating protein)
(Tip-associated protein) (mRNA export factor TAP)
Length = 618
Score = 32.7 bits (73), Expect = 0.27
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 101 ILDAIMNSVAGPFNMYSDYHTEYNKS---IKSGTTSSCALGNLHSVNKISHNNTSTITAA 271
+L I + + PFN ++H E ++ ++ TT+S G H + + S I A
Sbjct: 134 LLSMIQSKCSVPFNPI-EFHYENTRAHFFVEDATTASALKGVNHKIQDRENRRISIIINA 192
Query: 272 ATYDSYSKYQIDMQLSPHQLDRLKL 346
S Y + +L P Q+++LKL
Sbjct: 193 ----SAPPYTVQNELKPEQIEQLKL 213
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
Length = 311
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 213 PKAQDEVVPDFIDLLYSVW*SEYILNGPATEFMMASKIFKKD 88
PK D V+ + D+ +S+W + +N P T + AS++F KD
Sbjct: 60 PKRGDVVIGEITDIRFSMWGLD--INSPYTGLLPASEVFGKD 99
>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 (NeuroD4) (Atonal protein
homolog 3) (Helix-loop-helix protein mATH-3) (MATH3)
Length = 330
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 122 SVAGPFNMYSDYHTEYNKS---IKSGTTSSCALGNLHSVNKISHNNTSTITAAATYDSYS 292
S++G F++ D + KS + T++S + G++HS + + +YDSYS
Sbjct: 257 SISGNFSLKQDGSPDLEKSYNFMPHYTSASLSSGHVHSTPFQTGTPRYDVPVDLSYDSYS 316
Query: 293 KYQIDMQLS 319
+ I QL+
Sbjct: 317 HHSIGTQLN 325
>sp|Q9PHM5|RECN_CAMJE DNA repair protein recN (Recombination protein N)
Length = 507
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Frame = +2
Query: 5 ILQKSFTLSSEEAIEILSFTKSHQTPNQSFLNILDAI-----------MNSVAGPFNMYS 151
I +KS S+ I+ LS ++++ N+ FLN+LDA+ + FN YS
Sbjct: 96 IAKKSLQNLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYS 155
Query: 152 DYHTEYN 172
E N
Sbjct: 156 QISNELN 162
>sp|Q8YJK3|HIS8_BRUME Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 365
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 29 SSEEAIEILSFTKSHQTPNQSF------LNILDAIMNSVAGPFNMYS 151
S+E + + +F+K H P L+I+DA MN + GPFNM S
Sbjct: 211 SNENVVMMRTFSKIHGLPGLRIGWIYAPLHIIDA-MNRIRGPFNMNS 256
>sp|Q10259|SPC3_SCHPO Probable microsomal signal peptidase subunit 3
Length = 185
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 8 LQKSFTLSSEEAIEILSFTKSHQTPNQSFLNILDAIMNSVAGPFNMYSDYHTEYNKSIKS 187
L S++ E +++ + K +P +S + + D + N A PFN YS+ N +
Sbjct: 94 LVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHPFNEYSNQFEGKNATYTL 153
Query: 188 GTTSSCALGNL 220
T S +G L
Sbjct: 154 HWTVSPKMGFL 164
>sp|Q8FY98|HIS8_BRUSU Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 365
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 29 SSEEAIEILSFTKSHQTPNQSF------LNILDAIMNSVAGPFNMYS 151
S+E + +F+K H P L+I+DA MN + GPFNM S
Sbjct: 211 SNENVVMTRTFSKIHGLPGLRIGWIYAPLHIIDA-MNRIRGPFNMNS 256
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 122 SVAGPFNMYSDYHTEYNKSIKSGTTSSCALGNLHSVNKISHNNTSTITAAAT 277
S P + H +Y+KS+K + +SC L + K+ H+N + T
Sbjct: 123 SADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174
>sp|Q9S142|BFPB_ECO11 Outer membrane lipoprotein bfpB precursor (Bundle-forming pilus B)
Length = 552
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 50 ILSFTKSHQTPNQSFLNILDAIMNSVAGPFNMYSDYHTE----YNKSIKSGTTSSCALGN 217
+L + HQ + ++ L ++ VA +N+Y Y + N+ K + S G
Sbjct: 155 LLEVSSEHQLMDVNYQGALSTFLDKVAANYNLYWTYESGRIAFSNEETKRFSISILPGGK 214
Query: 218 LHSVNKISHNNTSTITAAATYDSYS 292
S N IS ++ S+ ++ + S S
Sbjct: 215 YTSKNSISSDSNSSSGSSGSSGSSS 239
>sp|P75441|Y337_MYCPN Hypothetical protein MG241 homolog (F10_orf621)
Length = 621
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 164 EYNKSIKSGTTSSCAL--GNLHSVNKISHNNTSTITAAATYDS-YSKYQIDMQLSPHQLD 334
+Y+K + T+ +L NL+S+N++ + + TA+ YD Y+K + MQL +D
Sbjct: 466 DYSKIFEQNRTNDPSLLRSNLNSINRLRYLSEYFRTASVKYDQLYTKVKEYMQLDQFLVD 525
Query: 335 RL 340
+
Sbjct: 526 MI 527
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,775,763
Number of Sequences: 369166
Number of extensions: 710067
Number of successful extensions: 1889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)