Planaria EST Database

DrC_00301

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00301
         (374 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92JM8|Y039_RICCN  Hypothetical protein RC0039                  34   0.12 
sp|Q9ZEB5|Y030_RICPR  Hypothetical protein RP030                   31   1.0  
sp|P26371|KRA59_HUMAN  Keratin-associated protein 5-9 (Kerat...    30   1.3  
sp|Q5J2U8|MATK_DROLU  Maturase K (Intron maturase)                 29   3.8  
sp|P55026|TYRO_TRISI  Tyrosinase precursor (Monophenol monoo...    29   3.8  
sp|Q9BYQ4|KRA92_HUMAN  Keratin-associated protein 9-2 (Kerat...    29   3.8  
sp|P30652|YOW6_CAEEL  Hypothetical protein ZK643.6 precursor       28   6.5  

>sp|Q92JM8|Y039_RICCN Hypothetical protein RC0039
          Length = 222

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 294 NVKEHVLNYLMHPHVVLYGDVKEHVPNCLMNLHGVLYG---DVKEHVLNYPVHLLLFLMN 124
           NV E V NYLMH H  +  D  +++ N    L G+      D+K  + ++ V+ +   MN
Sbjct: 102 NVAE-VSNYLMHQHSKIVRDANKNLTNPKDKLQGLTKQARIDLKRLLKSFAVYQIYMFMN 160

Query: 123 PKMI 112
           PK I
Sbjct: 161 PKRI 164

>sp|Q9ZEB5|Y030_RICPR Hypothetical protein RP030
          Length = 219

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 294 NVKEHVLNYLMHPHVVLYGDVKEHV---PNCLMNLHGVLYGDVKEHVLNYPVHLLLFLMN 124
           NV E V NYLMH H  +  D  +++    + L +L      D+K  + ++ V+ +   MN
Sbjct: 99  NVAE-VSNYLMHQHSKIVRDANKNLAKPKDKLQSLTKQARMDLKRLIKSFAVYQVYMFMN 157

Query: 123 PKMI 112
           PK I
Sbjct: 158 PKRI 161

>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
           (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 292 CEGACSELSDASPCCPLW*REGACSELSDESPWCPLW*CEGACSE 158
           C+  CS+ S   PCC    R  +C + S   P C    C  +C +
Sbjct: 102 CKPYCSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQ 146

>sp|Q5J2U8|MATK_DROLU Maturase K (Intron maturase)
          Length = 514

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = -3

Query: 330 FFYNSINYRAFFNVKEHV----------LNYLMHPHVVLYGDVKEHVPNCLMNLHGVLYG 181
           F Y S N+ +FF++K+++            +L + HV  Y  +   + N   +L    YG
Sbjct: 181 FLYESHNWNSFFSLKKNISFLKKRNQRFFLFLYNSHVCEYESIFFFICNQSSHLQSTFYG 240

Query: 180 DVKEHVLNY 154
            + E +  Y
Sbjct: 241 SLIERIHFY 249

>sp|P55026|TYRO_TRISI Tyrosinase precursor (Monophenol monooxygenase)
          Length = 273

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -2

Query: 283 ACSELSDASPCCPLW*REGA-CSELSDESPWCPLW*CEGACSE--LPGAP--PAFPNEPK 119
           A SE      CCPLW  +G+ C ELS            G+C E  L  AP  P FP    
Sbjct: 25  ASSESLLRKECCPLWAGDGSPCGELSG----------RGSCQEILLSRAPLGPQFPFTGV 74

Query: 118 DD 113
           DD
Sbjct: 75  DD 76

>sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 (Keratin-associated protein 9.2)
           (Ultrahigh sulfur keratin-associated protein 9.2)
          Length = 174

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -2

Query: 292 CEGACSELSDASPCCPLW*REGACSELSDESPWCPLW*CEGACSELPGAPP 140
           C+ AC   S   PCC     +  C   +   P C    C+ +C   P   P
Sbjct: 38  CQPACCVSSCCQPCCRPTSCQNTCCRTTCCQPTCVTSCCQPSCCSTPCCQP 88

>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
          Length = 180

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 283 ACSELSDASPCCPLW*REGACSELSDE 203
           AC+   DA+  CP+W   G CS+   +
Sbjct: 140 ACNICEDANKMCPIWVPRGFCSKFDHD 166

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,592,646
Number of Sequences: 369166
Number of extensions: 649641
Number of successful extensions: 1599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00301

  1. Dr_sW_008_C07
  2. Dr_sW_012_N16