Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C07
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92JM8|Y039_RICCN Hypothetical protein RC0039 34 0.12
sp|Q9ZEB5|Y030_RICPR Hypothetical protein RP030 31 1.0
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Kerat... 30 1.3
sp|Q5J2U8|MATK_DROLU Maturase K (Intron maturase) 29 3.8
sp|P55026|TYRO_TRISI Tyrosinase precursor (Monophenol monoo... 29 3.8
sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 (Kerat... 29 3.8
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 28 6.5
>sp|Q92JM8|Y039_RICCN Hypothetical protein RC0039
Length = 222
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 294 NVKEHVLNYLMHPHVVLYGDVKEHVPNCLMNLHGVLYG---DVKEHVLNYPVHLLLFLMN 124
NV E V NYLMH H + D +++ N L G+ D+K + ++ V+ + MN
Sbjct: 102 NVAE-VSNYLMHQHSKIVRDANKNLTNPKDKLQGLTKQARIDLKRLLKSFAVYQIYMFMN 160
Query: 123 PKMI 112
PK I
Sbjct: 161 PKRI 164
>sp|Q9ZEB5|Y030_RICPR Hypothetical protein RP030
Length = 219
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 294 NVKEHVLNYLMHPHVVLYGDVKEHV---PNCLMNLHGVLYGDVKEHVLNYPVHLLLFLMN 124
NV E V NYLMH H + D +++ + L +L D+K + ++ V+ + MN
Sbjct: 99 NVAE-VSNYLMHQHSKIVRDANKNLAKPKDKLQSLTKQARMDLKRLIKSFAVYQVYMFMN 157
Query: 123 PKMI 112
PK I
Sbjct: 158 PKRI 161
>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
(Ultrahigh sulfur keratin-associated protein 5.9)
(Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
Length = 169
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 292 CEGACSELSDASPCCPLW*REGACSELSDESPWCPLW*CEGACSE 158
C+ CS+ S PCC R +C + S P C C +C +
Sbjct: 102 CKPYCSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQ 146
>sp|Q5J2U8|MATK_DROLU Maturase K (Intron maturase)
Length = 514
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = -3
Query: 330 FFYNSINYRAFFNVKEHV----------LNYLMHPHVVLYGDVKEHVPNCLMNLHGVLYG 181
F Y S N+ +FF++K+++ +L + HV Y + + N +L YG
Sbjct: 181 FLYESHNWNSFFSLKKNISFLKKRNQRFFLFLYNSHVCEYESIFFFICNQSSHLQSTFYG 240
Query: 180 DVKEHVLNY 154
+ E + Y
Sbjct: 241 SLIERIHFY 249
>sp|P55026|TYRO_TRISI Tyrosinase precursor (Monophenol monooxygenase)
Length = 273
Score = 28.9 bits (63), Expect = 3.8
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = -2
Query: 283 ACSELSDASPCCPLW*REGA-CSELSDESPWCPLW*CEGACSE--LPGAP--PAFPNEPK 119
A SE CCPLW +G+ C ELS G+C E L AP P FP
Sbjct: 25 ASSESLLRKECCPLWAGDGSPCGELSG----------RGSCQEILLSRAPLGPQFPFTGV 74
Query: 118 DD 113
DD
Sbjct: 75 DD 76
>sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 (Keratin-associated protein 9.2)
(Ultrahigh sulfur keratin-associated protein 9.2)
Length = 174
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -2
Query: 292 CEGACSELSDASPCCPLW*REGACSELSDESPWCPLW*CEGACSELPGAPP 140
C+ AC S PCC + C + P C C+ +C P P
Sbjct: 38 CQPACCVSSCCQPCCRPTSCQNTCCRTTCCQPTCVTSCCQPSCCSTPCCQP 88
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 283 ACSELSDASPCCPLW*REGACSELSDE 203
AC+ DA+ CP+W G CS+ +
Sbjct: 140 ACNICEDANKMCPIWVPRGFCSKFDHD 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,592,646
Number of Sequences: 369166
Number of extensions: 649641
Number of successful extensions: 1599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)