Planarian EST Database

DrC_00283

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00283 TCGGCACGAGGGAAATTTCATAATTTTTGTTACTAATGGAAAATTCTGACACTGATAAAT ACGAACATTATAACTATGAAGAAGATAAATATATTGGGCGCACTGGTGGAAAAGCGCGGA CAAAGAAAGAAGTTGAACAAAATCATGGTGAGCAAGAAGCTAAGCACAATCGAATTGCAG TTCAAAAGTTGCAAAACAATGCCGAACATGTGAAAGAACAAAATCAAAATAAAAATTGAT GTTGACTTTTGGTGTAGCTTTATAACTTCGGGTGGAGTATTATTATGATTGTAATAAAAT TTTCTTAAAATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00283
         (312 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18571|VS11_ROTGA  Nonstructural protein                        32   0.35 
sp|O60356|NUPR1_HUMAN  Nuclear protein 1 (Protein p8) (Candi...    31   0.78 
sp|O75494|FUSIP_HUMAN  FUS-interacting serine-arginine-rich ...    30   1.7  
sp|P50470|SPH_STRPY  Immunoglobulin G binding protein H prec...    29   2.9  
sp|P09799|VCLA_GOSHI  Vicilin GC72-A precursor (Alpha-globul...    29   2.9  
sp|Q8SWH6|Y206_ENCCU  Hypothetical protein ECU02_0060              29   3.8  
sp|O02754|CEBPA_BOVIN  CCAAT/enhancer binding protein alpha ...    29   3.8  
sp|P36622|STE4_SCHPO  Sexual differentiation protein ste4          28   6.6  
sp|P53566|CEBPA_MOUSE  CCAAT/enhancer binding protein alpha ...    28   6.6  
sp|Q8CST4|IF2_STAES  Translation initiation factor IF-2 >gi|...    28   6.6

>sp|P18571|VS11_ROTGA Nonstructural protein
          Length = 170

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 33  LMENSDTDKYEHYNYEEDKYIGRTGGKARTK--KEVEQNHGEQEAKHNRI-AVQKLQNNA 203
           ++E S+  KY ++ + ED+ + R   KA  K  +E+++ H +     + +  + +L    
Sbjct: 68  MVEESNDAKYRNFEFSEDEEVHRPSSKASDKSYREMKRKHDDINTSDSILEKLSELNLEI 127

Query: 204 EHVKEQNQ 227
           E +K+ NQ
Sbjct: 128 EKIKQMNQ 135

>sp|O60356|NUPR1_HUMAN Nuclear protein 1 (Protein p8) (Candidate of metastasis 1)
          Length = 82

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 39  ENSDTDKYEHYNYEEDKYIGRTGGKARTKKEVEQN-HGEQEAKHNRIAVQKLQNN 200
           E+S  D+ + Y+     Y+G  G K RTK+E   N +      H R  V KLQN+
Sbjct: 20  EDSSLDESDLYSLAHS-YLGGGGRKGRTKREAAANTNRPSPGGHERKLVTKLQNS 73

>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
           protein with Ser-Arg repeats) (TLS-associated protein
           with SR repeats) (TASR) (TLS-associated serine-arginine
           protein) (TLS-associated SR protein) (40 kDa
           SR-repressor protein) (SRrp40) (Splicing factor SRp38)
 sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
           protein with Ser-Arg repeats) (TLS-associated protein
           with SR repeats) (TASR) (TLS-associated serine-arginine
           protein) (TLS-associated SR protein) (Neural-specific SR
           protein) (Neural-salient serine/arginine-rich protein)
          Length = 262

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 42  NSDTDKYEHYN--YEEDKYIGRTGGKARTKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVK 215
           +SD D+++H N  +   K   R+  K++ KKE++     + A H +       ++  H K
Sbjct: 159 HSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYK 218

>sp|P50470|SPH_STRPY Immunoglobulin G binding protein H precursor (IgG binding protein
           H)
          Length = 376

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
 Frame = +3

Query: 63  EHYNYEEDKYIGRTG--GKAR-------TKKEVEQNHGEQEAKHNRIAVQKLQNNA 203
           EH   +EDK I      G +R        KKE+E NH + EA+H ++   K  ++A
Sbjct: 193 EHQKLKEDKQISDASRQGLSRDLEASRAAKKELEANHQKLEAEHQKLKEDKQISDA 248

>sp|P09799|VCLA_GOSHI Vicilin GC72-A precursor (Alpha-globulin A)
          Length = 605

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 75  YEEDKYIGRTGGKARTKKEVEQNHGEQEAKHN 170
           Y+ED + G    K R ++E E + GEQ+ ++N
Sbjct: 150 YQEDPWKGERENKWREEEEEESDEGEQQQRNN 181

>sp|Q8SWH6|Y206_ENCCU Hypothetical protein ECU02_0060
          Length = 602

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +3

Query: 36  MENSDTDKYEHYNYEEDKYIGRTGGKARTKKEVEQNHGEQEAKHNRIAVQKLQNNAE 206
           M++++  KYE  N EE+K+ G      R+ +E+E    EQ+A H+ I V KL  + E
Sbjct: 420 MKSAERIKYELDNGEEEKWRG------RSIEEIE----EQKALHDIIEVLKLLRSKE 466

>sp|O02754|CEBPA_BOVIN CCAAT/enhancer binding protein alpha (C/EBP alpha)
          Length = 353

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 105 GGKARTKKEVEQNHGEQEAKH--NRIAVQKLQNNAEHVKEQNQNK 233
           GG  + KK V++N  E   +   N IAV+K ++ A+    + Q K
Sbjct: 264 GGGGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQK 308

>sp|P36622|STE4_SCHPO Sexual differentiation protein ste4
          Length = 264

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 111 KARTKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVKEQN 224
           K + K +++Q + +QE K+   + +KL+   EH+ + N
Sbjct: 71  KKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDN 108

>sp|P53566|CEBPA_MOUSE CCAAT/enhancer binding protein alpha (C/EBP alpha)
          Length = 359

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 96  GRTGGKARTKKEVEQNHGEQEAKH--NRIAVQKLQNNAEHVKEQNQNK 233
           G   G  + KK V++N  E   +   N IAV+K ++ A+    + Q K
Sbjct: 267 GSGAGAGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQK 314

>sp|Q8CST4|IF2_STAES Translation initiation factor IF-2
 sp|Q5HPS2|IF2_STAEQ Translation initiation factor IF-2
          Length = 720

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 120 TKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVKEQNQNK 233
           TKK+ + N G+Q+ K+N+    K Q N ++ K    NK
Sbjct: 91  TKKKEQNNKGKQQNKNNK--TNKNQKNNKNKKNNKNNK 126

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,736,621
Number of Sequences: 369166
Number of extensions: 533615
Number of successful extensions: 1908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00283

Planaria EST Database

DrC_00283

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail