Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N09
(306 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18571|VS11_ROTGA Nonstructural protein 32 0.35
sp|O60356|NUPR1_HUMAN Nuclear protein 1 (Protein p8) (Candi... 31 0.78
sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich ... 30 1.7
sp|P50470|SPH_STRPY Immunoglobulin G binding protein H prec... 29 3.0
sp|P09799|VCLA_GOSHI Vicilin GC72-A precursor (Alpha-globul... 29 3.0
sp|Q8SWH6|Y206_ENCCU Hypothetical protein ECU02_0060 29 3.9
sp|O02754|CEBPA_BOVIN CCAAT/enhancer binding protein alpha ... 29 3.9
sp|P36622|STE4_SCHPO Sexual differentiation protein ste4 28 6.6
sp|P53566|CEBPA_MOUSE CCAAT/enhancer binding protein alpha ... 28 6.6
sp|Q8CST4|IF2_STAES Translation initiation factor IF-2 >gi|... 28 6.6
>sp|P18571|VS11_ROTGA Nonstructural protein
Length = 170
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 33 LMENSDTDKYEHYNYEEDKYIGRTGGKARTK--KEVEQNHGEQEAKHNRI-AVQKLQNNA 203
++E S+ KY ++ + ED+ + R KA K +E+++ H + + + + +L
Sbjct: 68 MVEESNDAKYRNFEFSEDEEVHRPSSKASDKSYREMKRKHDDINTSDSILEKLSELNLEI 127
Query: 204 EHVKEQNQ 227
E +K+ NQ
Sbjct: 128 EKIKQMNQ 135
>sp|O60356|NUPR1_HUMAN Nuclear protein 1 (Protein p8) (Candidate of metastasis 1)
Length = 82
Score = 31.2 bits (69), Expect = 0.78
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 39 ENSDTDKYEHYNYEEDKYIGRTGGKARTKKEVEQN-HGEQEAKHNRIAVQKLQNN 200
E+S D+ + Y+ Y+G G K RTK+E N + H R V KLQN+
Sbjct: 20 EDSSLDESDLYSLAHS-YLGGGGRKGRTKREAAANTNRPSPGGHERKLVTKLQNS 73
>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (40 kDa
SR-repressor protein) (SRrp40) (Splicing factor SRp38)
sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (Neural-specific SR
protein) (Neural-salient serine/arginine-rich protein)
Length = 262
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 42 NSDTDKYEHYN--YEEDKYIGRTGGKARTKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVK 215
+SD D+++H N + K R+ K++ KKE++ + A H + ++ H K
Sbjct: 159 HSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYK 218
>sp|P50470|SPH_STRPY Immunoglobulin G binding protein H precursor (IgG binding protein
H)
Length = 376
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Frame = +3
Query: 63 EHYNYEEDKYIGRTG--GKAR-------TKKEVEQNHGEQEAKHNRIAVQKLQNNA 203
EH +EDK I G +R KKE+E NH + EA+H ++ K ++A
Sbjct: 193 EHQKLKEDKQISDASRQGLSRDLEASRAAKKELEANHQKLEAEHQKLKEDKQISDA 248
>sp|P09799|VCLA_GOSHI Vicilin GC72-A precursor (Alpha-globulin A)
Length = 605
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 75 YEEDKYIGRTGGKARTKKEVEQNHGEQEAKHN 170
Y+ED + G K R ++E E + GEQ+ ++N
Sbjct: 150 YQEDPWKGERENKWREEEEEESDEGEQQQRNN 181
>sp|Q8SWH6|Y206_ENCCU Hypothetical protein ECU02_0060
Length = 602
Score = 28.9 bits (63), Expect = 3.9
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 36 MENSDTDKYEHYNYEEDKYIGRTGGKARTKKEVEQNHGEQEAKHNRIAVQKLQNNAE 206
M++++ KYE N EE+K+ G R+ +E+E EQ+A H+ I V KL + E
Sbjct: 420 MKSAERIKYELDNGEEEKWRG------RSIEEIE----EQKALHDIIEVLKLLRSKE 466
>sp|O02754|CEBPA_BOVIN CCAAT/enhancer binding protein alpha (C/EBP alpha)
Length = 353
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 105 GGKARTKKEVEQNHGEQEAKH--NRIAVQKLQNNAEHVKEQNQNK 233
GG + KK V++N E + N IAV+K ++ A+ + Q K
Sbjct: 264 GGGGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQK 308
>sp|P36622|STE4_SCHPO Sexual differentiation protein ste4
Length = 264
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 111 KARTKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVKEQN 224
K + K +++Q + +QE K+ + +KL+ EH+ + N
Sbjct: 71 KKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDN 108
>sp|P53566|CEBPA_MOUSE CCAAT/enhancer binding protein alpha (C/EBP alpha)
Length = 359
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 96 GRTGGKARTKKEVEQNHGEQEAKH--NRIAVQKLQNNAEHVKEQNQNK 233
G G + KK V++N E + N IAV+K ++ A+ + Q K
Sbjct: 267 GSGAGAGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQK 314
>sp|Q8CST4|IF2_STAES Translation initiation factor IF-2
sp|Q5HPS2|IF2_STAEQ Translation initiation factor IF-2
Length = 720
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 120 TKKEVEQNHGEQEAKHNRIAVQKLQNNAEHVKEQNQNK 233
TKK+ + N G+Q+ K+N+ K Q N ++ K NK
Sbjct: 91 TKKKEQNNKGKQQNKNNK--TNKNQKNNKNKKNNKNNK 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,436,950
Number of Sequences: 369166
Number of extensions: 512595
Number of successful extensions: 1910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)