Planaria EST Database

DrC_00278

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00278
         (673 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    75   1e-13
sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    73   6e-13
sp|Q9ICF9|V002_FOWPV  Hypothetical protein FPV002/FPV259           32   1.5  
sp|Q72M00|ILVC_LEPIC  Ketol-acid reductoisomerase (Acetohydr...    30   5.7  
sp|Q8EYH2|ILVC_LEPIN  Ketol-acid reductoisomerase (Acetohydr...    30   5.7  
sp|P23038|MT_CRAVI  Metallothionein (MT)                           30   7.5  
sp|P98167|SSPO_BOVIN  SCO-spondin                                  30   7.5  
sp|P61243|YCF2_PHYPA  Protein ycf2                                 29   9.7  

>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = +2

Query: 26  DWQHGLCSCFDDCGLCLVSFFC-PCYTVGVDAEAVGENCCLCGFAVVTPAACFTVPLIRG 202
           +WQ G+C CF DCG+CL   FC PC  +G    A    CCLCG +V           +R 
Sbjct: 25  NWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA----------MRT 72

Query: 203 YIRDRQHIPGSYCEDFCVFFWCPCCTTAQMHQE 301
             R R  IPGS C+D+     CP CT  Q+ ++
Sbjct: 73  LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRD 105

>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = +2

Query: 26  DWQHGLCSCFDDCGLCLVSFFCPCYT-VGVDAEAVGENCCLCGFAVVTPAACFTVPLIRG 202
           +WQ  LC CF DCG+CL   FC  +T +G    A    CCLCG  V           +R 
Sbjct: 22  NWQTSLCDCFSDCGVCLCGTFC--FTCLGCQVAADMNECCLCGTTVA----------MRT 69

Query: 203 YIRDRQHIPGSYCEDFCVFFWCPCCTTAQMHQE 301
             R R  IPGS C+D+ V  +CP C+  Q+ ++
Sbjct: 70  LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRD 102

>sp|Q9ICF9|V002_FOWPV Hypothetical protein FPV002/FPV259
          Length = 222

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 236 YCEDFCVFFWCPCC 277
           +CED CV+ W PCC
Sbjct: 165 WCEDLCVWIWSPCC 178

>sp|Q72M00|ILVC_LEPIC Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 374

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -3

Query: 494 KIQIIK*MLNFSKS*SIRRLNNFRYLNKLKYSNKPKI 384
           K+QI K ++NFS+  S+  L+ F+ L K K+S K K+
Sbjct: 6   KVQITKHLVNFSRVISVVILSFFKCLVKRKHSRKEKM 42

>sp|Q8EYH2|ILVC_LEPIN Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 374

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -3

Query: 494 KIQIIK*MLNFSKS*SIRRLNNFRYLNKLKYSNKPKI 384
           K+QI K ++NFS+  S+  L+ F+ L K K+S K K+
Sbjct: 6   KVQITKHLVNFSRVISVVILSFFKCLVKRKHSRKEKM 42

>sp|P23038|MT_CRAVI Metallothionein (MT)
          Length = 75

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
 Frame = +2

Query: 38  GLCSCFDDCGL--------CLVSFFCPCYTVGVDAEAVGENCCLCGFAVVTPAAC 178
           G C+C D C          C     C C    V      E  C CG     PA C
Sbjct: 11  GTCACSDSCPATGCKCGPGCKCGDDCKCAGCKVKCSCTSEGGCKCGEKCTGPATC 65

>sp|P98167|SSPO_BOVIN SCO-spondin
          Length = 867

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 29  WQHG---LCSCFDDCGLCLVSFFCP---CYTVGVDAEAVGENCCLC 148
           W+ G   +C C  D G    S +CP   C    V  E VGE+CC C
Sbjct: 259 WRAGPCRVCQCLHD-GSARCSPYCPLGSCPQDWVLVEGVGESCCHC 303

>sp|P61243|YCF2_PHYPA Protein ycf2
          Length = 2259

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 225 FLVVTVKIFAYSFGVHAVLLRKCIKKHMNSVRIVY 329
           FL++T+ +F Y     A++     KKH+N V+IVY
Sbjct: 80  FLLLTLSVFLYHLNNKAIIE----KKHLNLVKIVY 110

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,078,675
Number of Sequences: 369166
Number of extensions: 1175761
Number of successful extensions: 2892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2886
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00278

  1. Dr_sW_007_K11
  2. Dr_sW_024_F10