Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K11
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 75 1e-13
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 73 6e-13
sp|Q9ICF9|V002_FOWPV Hypothetical protein FPV002/FPV259 32 1.5
sp|Q72M00|ILVC_LEPIC Ketol-acid reductoisomerase (Acetohydr... 30 5.7
sp|Q8EYH2|ILVC_LEPIN Ketol-acid reductoisomerase (Acetohydr... 30 5.7
sp|P23038|MT_CRAVI Metallothionein (MT) 30 7.4
sp|P98167|SSPO_BOVIN SCO-spondin 30 7.4
sp|P61243|YCF2_PHYPA Protein ycf2 29 9.7
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 75.5 bits (184), Expect = 1e-13
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 26 DWQHGLCSCFDDCGLCLVSFFC-PCYTVGVDAEAVGENCCLCGFAVVTPAACFTVPLIRG 202
+WQ G+C CF DCG+CL FC PC +G A CCLCG +V +R
Sbjct: 25 NWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA----------MRT 72
Query: 203 YIRDRQHIPGSYCEDFCVFFWCPCCTTAQMHQE 301
R R IPGS C+D+ CP CT Q+ ++
Sbjct: 73 LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRD 105
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 73.2 bits (178), Expect = 6e-13
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 26 DWQHGLCSCFDDCGLCLVSFFCPCYT-VGVDAEAVGENCCLCGFAVVTPAACFTVPLIRG 202
+WQ LC CF DCG+CL FC +T +G A CCLCG V +R
Sbjct: 22 NWQTSLCDCFSDCGVCLCGTFC--FTCLGCQVAADMNECCLCGTTVA----------MRT 69
Query: 203 YIRDRQHIPGSYCEDFCVFFWCPCCTTAQMHQE 301
R R IPGS C+D+ V +CP C+ Q+ ++
Sbjct: 70 LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRD 102
>sp|Q9ICF9|V002_FOWPV Hypothetical protein FPV002/FPV259
Length = 222
Score = 32.0 bits (71), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 236 YCEDFCVFFWCPCC 277
+CED CV+ W PCC
Sbjct: 165 WCEDLCVWIWSPCC 178
>sp|Q72M00|ILVC_LEPIC Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 374
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 494 KIQIIK*MLNFSKS*SIRRLNNFRYLNKLKYSNKPKI 384
K+QI K ++NFS+ S+ L+ F+ L K K+S K K+
Sbjct: 6 KVQITKHLVNFSRVISVVILSFFKCLVKRKHSRKEKM 42
>sp|Q8EYH2|ILVC_LEPIN Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 374
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 494 KIQIIK*MLNFSKS*SIRRLNNFRYLNKLKYSNKPKI 384
K+QI K ++NFS+ S+ L+ F+ L K K+S K K+
Sbjct: 6 KVQITKHLVNFSRVISVVILSFFKCLVKRKHSRKEKM 42
>sp|P23038|MT_CRAVI Metallothionein (MT)
Length = 75
Score = 29.6 bits (65), Expect = 7.4
Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Frame = +2
Query: 38 GLCSCFDDCGL--------CLVSFFCPCYTVGVDAEAVGENCCLCGFAVVTPAAC 178
G C+C D C C C C V E C CG PA C
Sbjct: 11 GTCACSDSCPATGCKCGPGCKCGDDCKCAGCKVKCSCTSEGGCKCGEKCTGPATC 65
>sp|P98167|SSPO_BOVIN SCO-spondin
Length = 867
Score = 29.6 bits (65), Expect = 7.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = +2
Query: 29 WQHG---LCSCFDDCGLCLVSFFCP---CYTVGVDAEAVGENCCLC 148
W+ G +C C D G S +CP C V E VGE+CC C
Sbjct: 259 WRAGPCRVCQCLHD-GSARCSPYCPLGSCPQDWVLVEGVGESCCHC 303
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 29.3 bits (64), Expect = 9.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 225 FLVVTVKIFAYSFGVHAVLLRKCIKKHMNSVRIVY 329
FL++T+ +F Y A++ KKH+N V+IVY
Sbjct: 80 FLLLTLSVFLYHLNNKAIIE----KKHLNLVKIVY 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,654,299
Number of Sequences: 369166
Number of extensions: 1199560
Number of successful extensions: 2983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2977
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)