Planarian EST Database

DrC_00276

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00276 TACTTTCTATTAATTTACAACAAGAAATGAGTCATCACCATAATCATCATGGTTACTATG AGCAGCCTCGTATTATAATCGAAGAGAGAGGTCCACATCATCGTCATCATCATCCTCCAC CAAGAGTTAACGATATAATGGTGAGAAACAATTATCCAGGTCCCGTTGTTTACCCAACTG TTACACCGGTCTATCAGGCTGGCTGTCCAAGCCAAACAATAATTTATGAAAATCGCACTG TATACGAACAATCACCTAATTCCAACTCTACAACTCCATAAAAGAATGCAAATTGGAAAA TTAACACTCATCAATTAGCTTCACTATAATATAGATGTTCATAACTTATTAATATAATAT TGGTCATATCAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00276
         (372 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp||O46248_1  [Segment 1 of 2] Hunchback protein >gi|3091613...    25   0.72 
sp||O46244_1  [Segment 1 of 2] Hunchback protein                   25   1.4  
sp||O46240_1  [Segment 1 of 2] Hunchback protein >gi|3091611...    25   1.4  
sp|Q9P8K9|HEX1_EMENI  Woronin body major protein                   30   1.7  
sp|Q24746|NEUR_DROVI  Neuralized protein                           29   3.9  
sp|Q58380|CBIX_METJA  Sirohydrochlorin cobaltochelatase (CbiXS)    29   3.9  
sp|O95886|DLGP3_HUMAN  Disks large-associated protein 3 (DAP...    25   4.0  
sp|Q6PFD5|DLGP3_MOUSE  Disks large-associated protein 3 (DAP...    25   4.0  
sp|P97838|DLP3_RAT  Disks large-associated protein 3 (DAP-3)...    25   4.0  
sp|P06719|KNOB_PLAFN  Knob-associated histidine-rich protein...    24   4.1

>sp||O46248_1 [Segment 1 of 2] Hunchback protein
 sp||O46258_1 [Segment 1 of 2] Hunchback protein
          Length = 64

 Score = 25.4 bits (54), Expect(2) = 0.72
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 12 NLQQEMSHHHNHHGYY 59
          N++QE   HHNHH ++
Sbjct: 9  NIKQEPISHHNHHHHH 24


 Score = 25.0 bits (53), Expect(2) = 0.72
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +3

Query: 33 HHHNHHGYYE 62
          HHH+HHG+++
Sbjct: 21 HHHHHHGHHQ 30

>sp||O46244_1 [Segment 1 of 2] Hunchback protein
          Length = 104

 Score = 25.0 bits (53), Expect(2) = 1.4
 Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
 Frame = +3

Query: 12 NLQQE-MSHHHNHH 50
          N++QE +SHHH+HH
Sbjct: 9  NIKQEPISHHHHHH 22


 Score = 24.3 bits (51), Expect(2) = 1.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 33 HHHNHHGYYEQP 68
          HHH HH +++ P
Sbjct: 21 HHHAHHSHHQHP 32

>sp||O46240_1 [Segment 1 of 2] Hunchback protein
 sp||O46238_1 [Segment 1 of 2] Hunchback protein
          Length = 104

 Score = 25.0 bits (53), Expect(2) = 1.4
 Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
 Frame = +3

Query: 12 NLQQE-MSHHHNHH 50
          N++QE +SHHH+HH
Sbjct: 9  NIKQEPISHHHHHH 22


 Score = 24.3 bits (51), Expect(2) = 1.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 33 HHHNHHGYYEQP 68
          HHH HH +++ P
Sbjct: 21 HHHAHHSHHQHP 32

>sp|Q9P8K9|HEX1_EMENI Woronin body major protein
          Length = 221

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 33 HHHNHHGYYEQPRIIIEERG 92
          HHH+HH ++ +  I+ +ERG
Sbjct: 31 HHHDHHDHHREEVIVTDERG 50

>sp|Q24746|NEUR_DROVI Neuralized protein
          Length = 747

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 12 NLQQEMSHHHNHHGY 56
          NLQQ+  HHH+HH +
Sbjct: 17 NLQQQQLHHHHHHNH 31

>sp|Q58380|CBIX_METJA Sirohydrochlorin cobaltochelatase (CbiXS)
          Length = 143

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  EMSHHHNHHGYYEQPRIIIEE 86
           E SHHH+HH ++E  ++ I E
Sbjct: 96  EHSHHHHHHHHHEHEKLEIPE 116

>sp|O95886|DLGP3_HUMAN Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 979

 Score = 24.6 bits (52), Expect(2) = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  HHHNHHGYYEQPR 71
           HHH+HH ++ Q R
Sbjct: 225 HHHHHHHHHHQSR 237


 Score = 22.7 bits (47), Expect(2) = 4.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 30  SHHHNHHGYY 59
           SHHH+HH ++
Sbjct: 222 SHHHHHHHHH 231

>sp|Q6PFD5|DLGP3_MOUSE Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 24.6 bits (52), Expect(2) = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  HHHNHHGYYEQPR 71
           HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236


 Score = 22.7 bits (47), Expect(2) = 4.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 30  SHHHNHHGYY 59
           SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230

>sp|P97838|DLP3_RAT Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 24.6 bits (52), Expect(2) = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  HHHNHHGYYEQPR 71
           HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236


 Score = 22.7 bits (47), Expect(2) = 4.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 30  SHHHNHHGYY 59
           SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230

>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein precursor (KAHRP)
          Length = 657

 Score = 24.3 bits (51), Expect(2) = 4.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 33  HHHNHHGYYEQPR 71
           HHH+HH + +QP+
Sbjct: 116 HHHHHHLHPQQPQ 128


 Score = 23.5 bits (49), Expect(2) = 6.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 18 QQEMSHHHNHHGYY 59
          Q++  HHH+HH ++
Sbjct: 58 QKQHEHHHHHHHHH 71


 Score = 23.1 bits (48), Expect(2) = 6.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 33  HHHNHHGYYEQP 68
           HHH+HH  ++ P
Sbjct: 67  HHHHHHHQHQAP 78


 Score = 23.1 bits (48), Expect(2) = 4.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 30  SHHHNHHG 53
           +HHH+HHG
Sbjct: 85  AHHHHHHG 92

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,584,831
Number of Sequences: 369166
Number of extensions: 588164
Number of successful extensions: 2185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00276

Planaria EST Database

DrC_00276

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail