Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K04
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp||O46248_1 [Segment 1 of 2] Hunchback protein >gi|3091613... 25 0.71
sp||O46244_1 [Segment 1 of 2] Hunchback protein 25 1.4
sp||O46240_1 [Segment 1 of 2] Hunchback protein >gi|3091611... 25 1.4
sp|Q9P8K9|HEX1_EMENI Woronin body major protein 30 1.7
sp|Q24746|NEUR_DROVI Neuralized protein 29 3.8
sp|Q58380|CBIX_METJA Sirohydrochlorin cobaltochelatase (CbiXS) 29 3.8
sp|O95886|DLGP3_HUMAN Disks large-associated protein 3 (DAP... 25 3.9
sp|Q6PFD5|DLGP3_MOUSE Disks large-associated protein 3 (DAP... 25 3.9
sp|P97838|DLP3_RAT Disks large-associated protein 3 (DAP-3)... 25 3.9
sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein... 24 4.1
>sp||O46248_1 [Segment 1 of 2] Hunchback protein
sp||O46258_1 [Segment 1 of 2] Hunchback protein
Length = 64
Score = 25.4 bits (54), Expect(2) = 0.71
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 12 NLQQEMSHHHNHHGYY 59
N++QE HHNHH ++
Sbjct: 9 NIKQEPISHHNHHHHH 24
Score = 25.0 bits (53), Expect(2) = 0.71
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +3
Query: 33 HHHNHHGYYE 62
HHH+HHG+++
Sbjct: 21 HHHHHHGHHQ 30
>sp||O46244_1 [Segment 1 of 2] Hunchback protein
Length = 104
Score = 25.0 bits (53), Expect(2) = 1.4
Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
Frame = +3
Query: 12 NLQQE-MSHHHNHH 50
N++QE +SHHH+HH
Sbjct: 9 NIKQEPISHHHHHH 22
Score = 24.3 bits (51), Expect(2) = 1.4
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 33 HHHNHHGYYEQP 68
HHH HH +++ P
Sbjct: 21 HHHAHHSHHQHP 32
>sp||O46240_1 [Segment 1 of 2] Hunchback protein
sp||O46238_1 [Segment 1 of 2] Hunchback protein
Length = 104
Score = 25.0 bits (53), Expect(2) = 1.4
Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
Frame = +3
Query: 12 NLQQE-MSHHHNHH 50
N++QE +SHHH+HH
Sbjct: 9 NIKQEPISHHHHHH 22
Score = 24.3 bits (51), Expect(2) = 1.4
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 33 HHHNHHGYYEQP 68
HHH HH +++ P
Sbjct: 21 HHHAHHSHHQHP 32
>sp|Q9P8K9|HEX1_EMENI Woronin body major protein
Length = 221
Score = 30.0 bits (66), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 33 HHHNHHGYYEQPRIIIEERG 92
HHH+HH ++ + I+ +ERG
Sbjct: 31 HHHDHHDHHREEVIVTDERG 50
>sp|Q24746|NEUR_DROVI Neuralized protein
Length = 747
Score = 28.9 bits (63), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 12 NLQQEMSHHHNHHGY 56
NLQQ+ HHH+HH +
Sbjct: 17 NLQQQQLHHHHHHNH 31
>sp|Q58380|CBIX_METJA Sirohydrochlorin cobaltochelatase (CbiXS)
Length = 143
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 24 EMSHHHNHHGYYEQPRIIIEE 86
E SHHH+HH ++E ++ I E
Sbjct: 96 EHSHHHHHHHHHEHEKLEIPE 116
>sp|O95886|DLGP3_HUMAN Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
Length = 979
Score = 24.6 bits (52), Expect(2) = 3.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 33 HHHNHHGYYEQPR 71
HHH+HH ++ Q R
Sbjct: 225 HHHHHHHHHHQSR 237
Score = 22.7 bits (47), Expect(2) = 3.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 30 SHHHNHHGYY 59
SHHH+HH ++
Sbjct: 222 SHHHHHHHHH 231
>sp|Q6PFD5|DLGP3_MOUSE Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
Length = 977
Score = 24.6 bits (52), Expect(2) = 3.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 33 HHHNHHGYYEQPR 71
HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236
Score = 22.7 bits (47), Expect(2) = 3.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 30 SHHHNHHGYY 59
SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230
>sp|P97838|DLP3_RAT Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
Length = 977
Score = 24.6 bits (52), Expect(2) = 3.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 33 HHHNHHGYYEQPR 71
HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236
Score = 22.7 bits (47), Expect(2) = 3.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 30 SHHHNHHGYY 59
SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230
>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein precursor (KAHRP)
Length = 657
Score = 24.3 bits (51), Expect(2) = 4.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 33 HHHNHHGYYEQPR 71
HHH+HH + +QP+
Sbjct: 116 HHHHHHLHPQQPQ 128
Score = 23.5 bits (49), Expect(2) = 6.7
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 18 QQEMSHHHNHHGYY 59
Q++ HHH+HH ++
Sbjct: 58 QKQHEHHHHHHHHH 71
Score = 23.1 bits (48), Expect(2) = 6.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 33 HHHNHHGYYEQP 68
HHH+HH ++ P
Sbjct: 67 HHHHHHHQHQAP 78
Score = 23.1 bits (48), Expect(2) = 4.1
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +3
Query: 30 SHHHNHHG 53
+HHH+HHG
Sbjct: 85 AHHHHHHG 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,784,173
Number of Sequences: 369166
Number of extensions: 610511
Number of successful extensions: 2203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)