DrC_00270
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00270 (815 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceos... 110 5e-24 sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120) 110 5e-24 sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein 33 0.93 sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperp... 33 1.2 sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor bet... 33 1.2 sp|P47673|RRF_MYCGE Ribosome recycling factor (Ribosome rel... 32 2.1 sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dep... 31 4.6 sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD-box protein A (ATP-dep... 31 4.6 sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperp... 31 4.6 sp|P10220|TEGU_HHV11 Large tegument protein (Virion protein... 30 6.1
>sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceosome associated protein 114) (SAP 114) (SF3a120) Length = 793 Score = 110 bits (275), Expect = 5e-24 Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 5/138 (3%) Frame = +2 Query: 77 PSIDPVKPNLIKPEEVLI-KPYDPKSK---PKKQADEVFLISPLGDNKKITTSQANQHIH 244 P P+ P P++V++ K YDPK+ P A + +L+SP+ +KI S+ +H+ Sbjct: 375 PMPPPLPPT---PDQVIVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMR 430 Query: 245 VGLLNPDWRVNRDRNTRNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGTEETVIGRKVGE 424 +GLL+P W RDR+ R K +D + G +++ +LK +AERRTDIFG EET IG+K+GE Sbjct: 431 IGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGE 490 Query: 425 ED-AKRGEKYIWDGHAAT 475 E+ K EK WDGH+ + Sbjct: 491 EEIQKPEEKVTWDGHSGS 508
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120) Length = 791 Score = 110 bits (275), Expect = 5e-24 Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 5/138 (3%) Frame = +2 Query: 77 PSIDPVKPNLIKPEEVLI-KPYDPKSK---PKKQADEVFLISPLGDNKKITTSQANQHIH 244 P P+ P P++V++ K YDPK+ P A + +L+SP+ +KI S+ +H+ Sbjct: 373 PMPPPLPPT---PDQVIVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMR 428 Query: 245 VGLLNPDWRVNRDRNTRNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGTEETVIGRKVGE 424 +GLL+P W RDR+ R K +D + G +++ +LK +AERRTDIFG EET IG+K+GE Sbjct: 429 IGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGE 488 Query: 425 ED-AKRGEKYIWDGHAAT 475 E+ K EK WDGH+ + Sbjct: 489 EEIQKPEEKVTWDGHSGS 506
>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein Length = 2480 Score = 33.1 bits (74), Expect = 0.93 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +1 Query: 175 GVPDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPEC--RLQ 348 GV A G+ + E ++ G AQP LEG P+ +E+A PE Q Sbjct: 2259 GVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQ 2318 Query: 349 PENDG 363 PE+ G Sbjct: 2319 PESGG 2323
>sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 32.7 bits (73), Expect = 1.2 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 157 EKTSRRGVPDLPARGQQEDHDEPGQSAHPR--GAAQPRLEGESRPQHQEQAAGRHAV 321 ++ G + A GQ ++HDE G AA+ + ES +Q+ A+GR +V Sbjct: 1586 DEQEEHGEENAEAEGQHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSV 1642
>sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor beta binding protein 4 precursor (LTBP-4) Length = 1666 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = +1 Query: 187 LPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEN 357 LP R + E +PG PR +PR ESRP+ + + RPE R QPE+ Sbjct: 504 LPTR-RPEPRPDPGPQPEPRPRPEPRPRPESRPRPEPRP--------RPEPRPQPES 551
>sp|P47673|RRF_MYCGE Ribosome recycling factor (Ribosome releasing factor) (RRF) Length = 183 Score = 32.0 bits (71), Expect = 2.1 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 71 KQPSIDPVKPNLIKPEEVLIKPYDPKSKPKKQADEV----FLISPLGDNKKI 214 K P I + + P E++IKP+DPKS E+ + P+ D +KI Sbjct: 49 KMPLISLAQVTINPpreIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKI 100
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD) sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD) sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD) Length = 629 Score = 30.8 bits (68), Expect = 4.6 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +1 Query: 181 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 360 PD P R ++E D + R PR + E RP+ + + G ++ R++ D Sbjct: 442 PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY-----RIEVGRD 496 Query: 361 GGAPNRH 381 G RH Sbjct: 497 DGVEVRH 503
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD) Length = 629 Score = 30.8 bits (68), Expect = 4.6 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +1 Query: 181 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 360 PD P R ++E D + R PR + E RP+ + + G ++ R++ D Sbjct: 442 PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY-----RIEVGRD 496 Query: 361 GGAPNRH 381 G RH Sbjct: 497 DGVEVRH 503
>sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog) Length = 2792 Score = 30.8 bits (68), Expect = 4.6 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 157 EKTSRRGVPDLPARGQQEDHDEPGQSAHPR--GAAQPRLEGESRPQHQEQAAGRHAV 321 ++ G + A G ++HDE G AA+ + ES +Q+ A+GR +V Sbjct: 1580 DEQEEHGEENAEAEGHHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSV 1636
>sp|P10220|TEGU_HHV11 Large tegument protein (Virion protein UL36) Length = 3164 Score = 30.4 bits (67), Expect = 6.1 Identities = 16/67 (23%), Positives = 30/67 (44%) Frame = +1 Query: 181 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 360 P + Q + +P P+ QP+ + + +PQ Q Q + +P+ + QP+N Sbjct: 2923 PQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQNG 2982 Query: 361 GGAPNRH 381 AP + Sbjct: 2983 HVAPGEY 2989
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,758,020
Number of Sequences: 369166
Number of extensions: 1406420
Number of successful extensions: 5840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5767
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
