Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H19
(813 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceos... 110 5e-24
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120) 110 5e-24
sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein 33 0.93
sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperp... 33 1.2
sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor bet... 33 1.2
sp|P47673|RRF_MYCGE Ribosome recycling factor (Ribosome rel... 32 2.1
sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dep... 31 4.6
sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD-box protein A (ATP-dep... 31 4.6
sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperp... 31 4.6
sp|P10220|TEGU_HHV11 Large tegument protein (Virion protein... 30 6.0
>sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceosome associated protein 114)
(SAP 114) (SF3a120)
Length = 793
Score = 110 bits (275), Expect = 5e-24
Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 5/138 (3%)
Frame = +3
Query: 75 PSIDPVKPNLIKPEEVLI-KPYDPKSK---PKKQADEVFLISPLGDNKKITTSQANQHIH 242
P P+ P P++V++ K YDPK+ P A + +L+SP+ +KI S+ +H+
Sbjct: 375 PMPPPLPPT---PDQVIVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMR 430
Query: 243 VGLLNPDWRVNRDRNTRNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGTEETVIGRKVGE 422
+GLL+P W RDR+ R K +D + G +++ +LK +AERRTDIFG EET IG+K+GE
Sbjct: 431 IGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGE 490
Query: 423 ED-AKRGEKYIWDGHAAT 473
E+ K EK WDGH+ +
Sbjct: 491 EEIQKPEEKVTWDGHSGS 508
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120)
Length = 791
Score = 110 bits (275), Expect = 5e-24
Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 5/138 (3%)
Frame = +3
Query: 75 PSIDPVKPNLIKPEEVLI-KPYDPKSK---PKKQADEVFLISPLGDNKKITTSQANQHIH 242
P P+ P P++V++ K YDPK+ P A + +L+SP+ +KI S+ +H+
Sbjct: 373 PMPPPLPPT---PDQVIVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMR 428
Query: 243 VGLLNPDWRVNRDRNTRNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGTEETVIGRKVGE 422
+GLL+P W RDR+ R K +D + G +++ +LK +AERRTDIFG EET IG+K+GE
Sbjct: 429 IGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGE 488
Query: 423 ED-AKRGEKYIWDGHAAT 473
E+ K EK WDGH+ +
Sbjct: 489 EEIQKPEEKVTWDGHSGS 506
>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein
Length = 2480
Score = 33.1 bits (74), Expect = 0.93
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 173 GVPDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPEC--RLQ 346
GV A G+ + E ++ G AQP LEG P+ +E+A PE Q
Sbjct: 2259 GVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQ 2318
Query: 347 PENDG 361
PE+ G
Sbjct: 2319 PESGG 2323
>sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
(hHYD) (Progestin-induced protein)
Length = 2799
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 155 EKTSRRGVPDLPARGQQEDHDEPGQSAHPR--GAAQPRLEGESRPQHQEQAAGRHAV 319
++ G + A GQ ++HDE G AA+ + ES +Q+ A+GR +V
Sbjct: 1586 DEQEEHGEENAEAEGQHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSV 1642
>sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor beta binding protein 4 precursor
(LTBP-4)
Length = 1666
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 185 LPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEN 355
LP R + E +PG PR +PR ESRP+ + + RPE R QPE+
Sbjct: 504 LPTR-RPEPRPDPGPQPEPRPRPEPRPRPESRPRPEPRP--------RPEPRPQPES 551
>sp|P47673|RRF_MYCGE Ribosome recycling factor (Ribosome releasing factor) (RRF)
Length = 183
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 69 KQPSIDPVKPNLIKPEEVLIKPYDPKSKPKKQADEV----FLISPLGDNKKI 212
K P I + + P E++IKP+DPKS E+ + P+ D +KI
Sbjct: 49 KMPLISLAQVTINPpreIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKI 100
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
Length = 629
Score = 30.8 bits (68), Expect = 4.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 179 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 358
PD P R ++E D + R PR + E RP+ + + G ++ R++ D
Sbjct: 442 PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY-----RIEVGRD 496
Query: 359 GGAPNRH 379
G RH
Sbjct: 497 DGVEVRH 503
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
Length = 629
Score = 30.8 bits (68), Expect = 4.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 179 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 358
PD P R ++E D + R PR + E RP+ + + G ++ R++ D
Sbjct: 442 PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY-----RIEVGRD 496
Query: 359 GGAPNRH 379
G RH
Sbjct: 497 DGVEVRH 503
>sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
Length = 2792
Score = 30.8 bits (68), Expect = 4.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 155 EKTSRRGVPDLPARGQQEDHDEPGQSAHPR--GAAQPRLEGESRPQHQEQAAGRHAV 319
++ G + A G ++HDE G AA+ + ES +Q+ A+GR +V
Sbjct: 1580 DEQEEHGEENAEAEGHHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSV 1636
>sp|P10220|TEGU_HHV11 Large tegument protein (Virion protein UL36)
Length = 3164
Score = 30.4 bits (67), Expect = 6.0
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 179 PDLPARGQQEDHDEPGQSAHPRGAAQPRLEGESRPQHQEQAAGRHAVHVRPECRLQPEND 358
P + Q + +P P+ QP+ + + +PQ Q Q + +P+ + QP+N
Sbjct: 2923 PQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQNG 2982
Query: 359 GGAPNRH 379
AP +
Sbjct: 2983 HVAPGEY 2989
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,482,217
Number of Sequences: 369166
Number of extensions: 1371173
Number of successful extensions: 5252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5190
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)