Planaria EST Database

DrC_00264

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00264
         (669 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15502|ELN_HUMAN  Elastin precursor (Tropoelastin)              32   1.5  
sp|P10180|CUT_DROME  Homeobox protein cut                          29   9.8  

>sp|P15502|ELN_HUMAN Elastin precursor (Tropoelastin)
          Length = 786

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +2

Query: 191 VGMPCVGRPYVGVPGATTVIAPGAVHHVGYPG 286
           VG+P  G P VGVPGA   + PGA    G PG
Sbjct: 334 VGVPGAGVPGVGVPGAGIPVVPGA----GIPG 361

>sp|P10180|CUT_DROME Homeobox protein cut
          Length = 2175

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 280 VSNVMNCTWSNNSCCTRHSNIGPSNTRHADTS 185
           VSN  N T SNNSC  +++N G  + +H  +S
Sbjct: 345 VSNNHNTTDSNNSCSRKNNNGGNESEQHVASS 376

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,528,524
Number of Sequences: 369166
Number of extensions: 1020339
Number of successful extensions: 3280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00264

  1. Dr_sW_007_H03
  2. Dr_sW_010_B04
  3. Dr_sW_016_K05
  4. Dr_sW_003_F07