Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B04
(602 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15502|ELN_HUMAN Elastin precursor (Tropoelastin) 32 1.2
sp|P10180|CUT_DROME Homeobox protein cut 29 8.0
>sp|P15502|ELN_HUMAN Elastin precursor (Tropoelastin)
Length = 786
Score = 32.0 bits (71), Expect = 1.2
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 179 VGMPCVGRPYVGVPGATTVIAPGAVHHVGYPG 274
VG+P G P VGVPGA + PGA G PG
Sbjct: 334 VGVPGAGVPGVGVPGAGIPVVPGA----GIPG 361
>sp|P10180|CUT_DROME Homeobox protein cut
Length = 2175
Score = 29.3 bits (64), Expect = 8.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 268 VSNVMNCTWSNNSCCTRHSNIGPSNTRHADTS 173
VSN N T SNNSC +++N G + +H +S
Sbjct: 345 VSNNHNTTDSNNSCSRKNNNGGNESEQHVASS 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,813,751
Number of Sequences: 369166
Number of extensions: 841162
Number of successful extensions: 2887
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)