Planaria EST Database

DrC_00255

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00255
         (825 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62333|PRS10_HUMAN  26S protease regulatory subunit S10B ...   461   e-129
sp|O17071|PRS10_CAEEL  Probable 26S protease regulatory subu...   433   e-121
sp|O74445|PRS10_SCHPO  Probable 26S protease subunit rpt4         406   e-113
sp|P53549|PRS10_YEAST  26S protease subunit RPT4 (26S protea...   392   e-109
sp|Q8TX03|PSMR_METKA  Proteasome-activating nucleotidase (Pr...   248   1e-65
sp|O28303|PSMR_ARCFU  Proteasome-activating nucleotidase (Pr...   246   4e-65
sp|Q8U4H3|PSMR_PYRFU  Proteasome-activating nucleotidase (Pr...   244   2e-64
sp|O26824|PSMR_METTH  Proteasome-activating nucleotidase (Pr...   239   9e-63
sp|O57940|PSMR_PYRHO  Proteasome-activating nucleotidase (Pr...   238   1e-62
sp|Q980M1|PSMR_SULSO  Proteasome-activating nucleotidase (Pr...   238   1e-62

>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit S10B (Proteasome subunit p42)
           (Proteasome 26S subunit ATPase 6)
 sp|P62335|PRS10_SPETR 26S protease regulatory subunit S10B (Proteasome subunit p42)
           (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
 sp|P62334|PRS10_MOUSE 26S protease regulatory subunit S10B (Proteasome subunit p42)
           (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score =  461 bits (1186), Expect = e-129
 Identities = 227/266 (85%), Positives = 251/266 (94%)
 Frame = +1

Query: 28  REKIFNDHKRKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQL 207
           R+K   D+++KL+EH+EI+ +LKE RE+L++L+K+YEKSENDLKALQSVGQIVG+VLKQL
Sbjct: 5   RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 208 TDDHFIVKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSA 387
           T++ FIVKA+NGPRYVVGCRR LDKSKLK GTRVALDMTTLTIMRYLpreVDPLVYNMS 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLpreVDPLVYNMSH 124

Query: 388 EDPGDVNYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLA 567
           EDPG+V+Y+ IGGL+EQIRELREVIELPL NPELFQRVGI PPKGCLLYGPPGTGKTLLA
Sbjct: 125 EDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLA 184

Query: 568 RAVASQLDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFS 747
           RAVASQLD NFLKVVSS IVDKYIGESARLIREMF+YARDH+PC+IFMDEIDAIGGRRFS
Sbjct: 185 RAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFS 244

Query: 748 EGTSADREIQRTLMELLNQMDGFDAL 825
           EGTSADREIQRTLMELLNQMDGFD L
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTL 270

>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit S10B
          Length = 406

 Score =  433 bits (1114), Expect = e-121
 Identities = 208/269 (77%), Positives = 248/269 (92%)
 Frame = +1

Query: 19  DSAREKIFNDHKRKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVL 198
           +  R K  N ++RKL E R+IE KLK+ R+K  +++K+++KSEND+K+LQSVGQIVG+VL
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 199 KQLTDDHFIVKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYN 378
           KQL+++ FIVKA+NGPRYVVGCRR+++K +LK GTRV+LDMTTLTIMR LpreVDPLVY 
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLpreVDPLVYK 138

Query: 379 MSAEDPGDVNYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 558
           MS EDPG+++Y+ +GGLAEQIRELREV+ELPL+NPELF+RVGITPPKGCLL+GPPGTGKT
Sbjct: 139 MSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKT 198

Query: 559 LLARAVASQLDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGR 738
           LLARAVASQLD NFLKVVSS IVDKYIGESAR+IREMF+YARDH+PC++FMDEIDAIGGR
Sbjct: 199 LLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGR 258

Query: 739 RFSEGTSADREIQRTLMELLNQMDGFDAL 825
           RFSEGTSADREIQRTLMELLNQ+DGFD+L
Sbjct: 259 RFSEGTSADREIQRTLMELLNQLDGFDSL 287

>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4
          Length = 388

 Score =  406 bits (1044), Expect = e-113
 Identities = 203/268 (75%), Positives = 231/268 (86%)
 Frame = +1

Query: 22  SAREKIFNDHKRKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLK 201
           S R+     +K  L++HRE ++KLK+ R   RDL K+Y+K+E+D+K+LQSVGQI+G+VLK
Sbjct: 2   SERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLK 61

Query: 202 QLTDDHFIVKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNM 381
           QL  + FIVKAS+GPRYVVGCR N+D+S L  G RV+LDMTTLTIMR LpreVDPLVYNM
Sbjct: 62  QLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILpreVDPLVYNM 121

Query: 382 SAEDPGDVNYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTL 561
           S EDPGD+++  +GGL EQIRELREVIELPL NPELF RVGI PPKG LLYGPPGTGKTL
Sbjct: 122 SIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTL 181

Query: 562 LARAVASQLDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRR 741
           LARAVA+ L  NFLKVVSS IVDKYIGESAR+IREMF YA++HEPCVIFMDEIDAIGGRR
Sbjct: 182 LARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRR 241

Query: 742 FSEGTSADREIQRTLMELLNQMDGFDAL 825
           FSEGTSADREIQRTLMELLNQMDGFD L
Sbjct: 242 FSEGTSADREIQRTLMELLNQMDGFDYL 269

>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
           cap subunit)
          Length = 437

 Score =  392 bits (1007), Expect = e-109
 Identities = 187/267 (70%), Positives = 230/267 (86%)
 Frame = +1

Query: 25  AREKIFNDHKRKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQ 204
           A  K  N  KRKL+EHR  + +LK+ R+ +RDL K Y+K+END+KALQS+GQ++G+V+K+
Sbjct: 52  AHNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKE 111

Query: 205 LTDDHFIVKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMS 384
           L+++ +IVKAS+GPRY+VG R ++D+SKLK G RV LD+TTLTIMR Lpre DPLVYNM+
Sbjct: 112 LSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILpreTDPLVYNMT 171

Query: 385 AEDPGDVNYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLL 564
           + + G++ +  IGGL EQIRELREVIELPL NPE+FQRVGI PPKG LLYGPPGTGKTLL
Sbjct: 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231

Query: 565 ARAVASQLDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRF 744
           A+AVA+ + ANF+   +SGIVDKYIGESAR+IREMF+YA++HEPC+IFMDE+DAIGGRRF
Sbjct: 232 AKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291

Query: 745 SEGTSADREIQRTLMELLNQMDGFDAL 825
           SEGTSADREIQRTLMELL QMDGFD L
Sbjct: 292 SEGTSADREIQRTLMELLTQMDGFDNL 318

>sp|Q8TX03|PSMR_METKA Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 436

 Score =  248 bits (634), Expect = 1e-65
 Identities = 129/268 (48%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
 Frame = +1

Query: 31  EKIFNDHKRKLIEHREIETKLKEA---REKLRDLSKEYEKSENDLKALQSVGQIVGDVLK 201
           EK+  + +R+    +E+E +  E    RE+LR      EK  +DL+ ++    IVG V +
Sbjct: 49  EKLRIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEE 108

Query: 202 QLTDDHFIVKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNM 381
            L D   IVK+S GP++V      +D+++L+ G  VAL+  ++ ++  LP E D  V  M
Sbjct: 109 ILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAM 168

Query: 382 SAEDPGDVNYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTL 561
             ++  DV+Y  IGGL EQIRE+REV+E PL  PELF++VG+ PPKG LLYGPPGTGKTL
Sbjct: 169 EVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTL 228

Query: 562 LARAVASQLDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRR 741
           LA+AVA+  DA F+++ +  +V K+IGE ARL+RE+F  AR+  P +IF+DEIDAIG RR
Sbjct: 229 LAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARR 288

Query: 742 FSEGTSADREIQRTLMELLNQMDGFDAL 825
             + TS DRE+QRTL +LL +MDGFD L
Sbjct: 289 MRDATSGDREVQRTLTQLLAEMDGFDPL 316

>sp|O28303|PSMR_ARCFU Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 398

 Score =  246 bits (629), Expect = 4e-65
 Identities = 128/255 (50%), Positives = 174/255 (68%)
 Frame = +1

Query: 55  RKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQLTDDHFIVKA 234
           R+L    E E K  E+ E++R   +E  +  ++++ L+S   +VG V   L D   +VK+
Sbjct: 24  RELYRRLEDEKKFIES-ERIR-YEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKS 81

Query: 235 SNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSAEDPGDVNYT 414
           S GP++VV   + +++ +LK G RVAL+  TL I+  LP   DP+VY    E+  +V+Y 
Sbjct: 82  STGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYE 141

Query: 415 SIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 594
            IGGL  QI E+RE +ELPLL PELF  VGI PPKG LLYGPPGTGKTLLA+AVA+Q  A
Sbjct: 142 DIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRA 201

Query: 595 NFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFSEGTSADREI 774
            F++VV S  V KYIGE ARL+RE+F  A++  P +IF+DE+DAI  RR +  TS DRE+
Sbjct: 202 TFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREV 261

Query: 775 QRTLMELLNQMDGFD 819
           QRT+M+LL ++DGFD
Sbjct: 262 QRTMMQLLAELDGFD 276

>sp|Q8U4H3|PSMR_PYRFU Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 396

 Score =  244 bits (624), Expect = 2e-64
 Identities = 123/255 (48%), Positives = 172/255 (67%)
 Frame = +1

Query: 55  RKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQLTDDHFIVKA 234
           ++ I   E++ ++ EA ++   L +E  +  +++  L+      G V++ L DD  IV+ 
Sbjct: 20  KRRIRQLELQVRMLEADKER--LERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQN 77

Query: 235 SNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSAEDPGDVNYT 414
            NGPR+VV     +DKSKL+ GTRVALD  T+ I+  LP   DP V      +  +V Y 
Sbjct: 78  YNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYN 137

Query: 415 SIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 594
            IGGL +Q++ELRE IELPL +PELF+ VGI PPKG LLYGPPG GKTL+A+A+A +++A
Sbjct: 138 DIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNA 197

Query: 595 NFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFSEGTSADREI 774
            F++VV S +V KYIGE ARL+ E+F  A++  P +IF+DEIDAIG +R  E T  +RE+
Sbjct: 198 TFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREV 257

Query: 775 QRTLMELLNQMDGFD 819
            RTLM+LL +MDGFD
Sbjct: 258 NRTLMQLLAEMDGFD 272

>sp|O26824|PSMR_METTH Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 410

 Score =  239 bits (609), Expect = 9e-63
 Identities = 121/259 (46%), Positives = 177/259 (68%), Gaps = 2/259 (0%)
 Frame = +1

Query: 52  KRKLI-EHREIET-KLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQLTDDHFI 225
           KR L+ + R++E  KL    E+ R L +E +    +++  ++   ++  V + L D    
Sbjct: 30  KRNLMWKIRKLEKDKLLIENERTR-LDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVA 88

Query: 226 VKASNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSAEDPGDV 405
           VK++ GP +V+   R +D+ +L+ G RVAL+  T +I+  LP E DP+V  M  E+  DV
Sbjct: 89  VKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDV 148

Query: 406 NYTSIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 585
           +Y  IGGL EQ+RE++E +ELPL  PELF+++GI PPKG LLYGPPGTGKTLLA+AVA +
Sbjct: 149 SYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHE 208

Query: 586 LDANFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFSEGTSAD 765
            +A F+K+V+S  V KYIGE ARL+R +F  A++  P +IF+DEIDA+  +R    TS D
Sbjct: 209 TNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGD 268

Query: 766 REIQRTLMELLNQMDGFDA 822
           RE+QRTLM+LL ++DGF++
Sbjct: 269 REVQRTLMQLLAELDGFES 287

>sp|O57940|PSMR_PYRHO Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 399

 Score =  238 bits (608), Expect = 1e-62
 Identities = 119/255 (46%), Positives = 171/255 (67%)
 Frame = +1

Query: 55  RKLIEHREIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQLTDDHFIVKA 234
           ++ I   E++ ++ EA ++   L +E  +  +++  L+      G V++ L +D  IV+ 
Sbjct: 23  KRRIRQLELQVRMLEADKER--LERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQN 80

Query: 235 SNGPRYVVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSAEDPGDVNYT 414
            NGPR+VV     +D+ KL+ GTRVALD  T+ ++  LP   DP V      +  +V Y 
Sbjct: 81  YNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYN 140

Query: 415 SIGGLAEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 594
            IGGL +Q++ELRE IELPL +PELF+ VGI PPKG LLYGPPG GKTL+A+A+A +++A
Sbjct: 141 DIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNA 200

Query: 595 NFLKVVSSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFSEGTSADREI 774
            F++VV S +V KYIGE ARL+ E+F  A++  P +IF+DEIDAIG +R  E T  +RE+
Sbjct: 201 TFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREV 260

Query: 775 QRTLMELLNQMDGFD 819
            RTLM+LL +MDGFD
Sbjct: 261 NRTLMQLLAEMDGFD 275

>sp|Q980M1|PSMR_SULSO Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 393

 Score =  238 bits (607), Expect = 1e-62
 Identities = 120/251 (47%), Positives = 172/251 (68%)
 Frame = +1

Query: 73  REIETKLKEAREKLRDLSKEYEKSENDLKALQSVGQIVGDVLKQLTDDHFIVKASNGPRY 252
           R +E K+K  + ++ +L KE    + +++ + S   I   VL  L D   +V++S+GP  
Sbjct: 21  RLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNL 80

Query: 253 VVGCRRNLDKSKLKAGTRVALDMTTLTIMRYLpreVDPLVYNMSAEDPGDVNYTSIGGLA 432
           VV    ++D+  +K G  VAL+    TI+  LP++ DP+V  M   +  +V Y+ IGGL 
Sbjct: 81  VVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLE 140

Query: 433 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 612
           EQIRELREV+ELPL NPE+F+ +G+ PPKG LLYGPPGTGKT+LA+AVA++ +A F+ VV
Sbjct: 141 EQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVV 200

Query: 613 SSGIVDKYIGESARLIREMFSYARDHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLME 792
           +S    K++GE AR++RE+F  A+   P +IF+DEIDAIG +R   GTS +REIQRTLM+
Sbjct: 201 ASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQ 260

Query: 793 LLNQMDGFDAL 825
           LL ++DGFD L
Sbjct: 261 LLAELDGFDPL 271

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,517,363
Number of Sequences: 369166
Number of extensions: 1655904
Number of successful extensions: 9606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9488
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00255

  1. Dr_sW_007_D15
  2. Dr_sW_022_E24