Planaria EST Database

DrC_00249

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00249
         (830 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42237|SEM3E_CHICK  Semaphorin-3E precursor (Collapsin-5)...    32   1.6  
sp|Q90665|SEM4D_CHICK  Semaphorin-4D (Collapsin-4) (COLL-4)        32   2.8  
sp|O15041|SEM3E_HUMAN  Semaphorin-3E precursor                     30   6.2  
sp|O84547|SYH_CHLTR  Histidyl-tRNA synthetase (Histidine--tR...    30   8.2  
sp|Q9CG80|TOP1_LACLA  DNA topoisomerase I (Omega-protein) (R...    30   8.2  

>sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5) (COLL-5)
          Length = 785

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 496 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKI 675
           YN   +AV+   A    +  +D++F+ TDNG    + T+YN   ES     L  ++  K+
Sbjct: 435 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQETESMEEVILEELQVFKV 491

>sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4)
          Length = 295

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +1

Query: 439 DDCMAIIGNEYRPSPFIFIYNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYN 618
           DD +  +G+  RP        +  + V+  RAL  + +I+D++F+ TD G      +  N
Sbjct: 174 DDSVTPVGD--RPRLVKRDVKYTQIVVDRVRAL--NGTIYDVMFISTDQGALHKAISYEN 229

Query: 619 G---IEESQIIDCLNHIRTIKIQGK 684
           G   IEE+Q+      ++T+ +  K
Sbjct: 230 GMHIIEETQLFPKFEPVQTLLLSSK 254

>sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor
          Length = 775

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 496 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIK 672
           YN   +AV+   A    +  +D++F+ TDNG    + T+YN   ES     L  ++  K
Sbjct: 431 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFK 486

>sp|O84547|SYH_CHLTR Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
          Length = 428

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -1

Query: 350 EDSHSGKYTNAYGLLSEHVVITHPPTAIPMLNKIADLLIELGKFDRQIKSDFINGQPSGG 171
           E   SG+Y   +    E + + HP     +L+ + D    +G    QI  +F+ GQ +  
Sbjct: 121 ERQQSGRYRQHHQFGLEAIGVRHPLRDAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRA 180

Query: 170 GLDSFIFE-IRRLKDSTVPLDEFR 102
             D  + E  R+  D   PL + R
Sbjct: 181 RYDEALREFFRKDLDRLSPLSQER 204

>sp|Q9CG80|TOP1_LACLA DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 710

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
 Frame = +1

Query: 205 FICLSNLPSSMSRSAILFNIGIAVGGCVMTTCSDSRP------YAFVYLPECESSAWESV 366
           F   SN P   +  AI+  IG+    C      + +       Y     P+CE ++W+  
Sbjct: 612 FYACSNFPDCRNTKAIVKEIGVKCPLCHEGNIIERKTKKNRIFYGCDRYPDCEFTSWDKP 671

Query: 367 IGR--------LASRNIQGNYMDLHEVYLQSNDDC 447
           IGR        L  + ++G    +    + SND+C
Sbjct: 672 IGRDCPKSGHFLVEKKVRGGGKQV----VCSNDEC 702

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,738,068
Number of Sequences: 369166
Number of extensions: 2269383
Number of successful extensions: 6022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6021
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00249

  1. Dr_sW_006_P16
  2. Dr_sW_001_E05