Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P16
(823 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5)... 32 1.6
sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4) 32 2.8
sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor 30 6.1
sp|O84547|SYH_CHLTR Histidyl-tRNA synthetase (Histidine--tR... 30 8.0
sp|Q9CG80|TOP1_LACLA DNA topoisomerase I (Omega-protein) (R... 30 8.0
>sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5) (COLL-5)
Length = 785
Score = 32.3 bits (72), Expect = 1.6
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 496 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKI 675
YN +AV+ A + +D++F+ TDNG + T+YN ES L ++ K+
Sbjct: 435 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQETESMEEVILEELQVFKV 491
>sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4)
Length = 295
Score = 31.6 bits (70), Expect = 2.8
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +1
Query: 439 DDCMAIIGNEYRPSPFIFIYNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYN 618
DD + +G+ RP + + V+ RAL + +I+D++F+ TD G + N
Sbjct: 174 DDSVTPVGD--RPRLVKRDVKYTQIVVDRVRAL--NGTIYDVMFISTDQGALHKAISYEN 229
Query: 619 G---IEESQIIDCLNHIRTIKIQGK 684
G IEE+Q+ ++T+ + K
Sbjct: 230 GMHIIEETQLFPKFEPVQTLLLSSK 254
>sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor
Length = 775
Score = 30.4 bits (67), Expect = 6.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 496 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIK 672
YN +AV+ A + +D++F+ TDNG + T+YN ES L ++ K
Sbjct: 431 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFK 486
>sp|O84547|SYH_CHLTR Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
Length = 428
Score = 30.0 bits (66), Expect = 8.0
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -3
Query: 350 EDSHSGKYTNAYGLLSEHVVITHPPTAIPMLNKIADLLIELGKFDRQIKSDFINGQPSGG 171
E SG+Y + E + + HP +L+ + D +G QI +F+ GQ +
Sbjct: 121 ERQQSGRYRQHHQFGLEAIGVRHPLRDAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRA 180
Query: 170 GLDSFIFE-IRRLKDSTVPLDEFR 102
D + E R+ D PL + R
Sbjct: 181 RYDEALREFFRKDLDRLSPLSQER 204
>sp|Q9CG80|TOP1_LACLA DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 710
Score = 30.0 bits (66), Expect = 8.0
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Frame = +1
Query: 205 FICLSNLPSSMSRSAILFNIGIAVGGCVMTTCSDSRP------YAFVYLPECESSAWESV 366
F SN P + AI+ IG+ C + + Y P+CE ++W+
Sbjct: 612 FYACSNFPDCRNTKAIVKEIGVKCPLCHEGNIIERKTKKNRIFYGCDRYPDCEFTSWDKP 671
Query: 367 IGR--------LASRNIQGNYMDLHEVYLQSNDDC 447
IGR L + ++G + + SND+C
Sbjct: 672 IGRDCPKSGHFLVEKKVRGGGKQV----VCSNDEC 702
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,043,611
Number of Sequences: 369166
Number of extensions: 2260907
Number of successful extensions: 5924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5923
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)