Planaria EST Database

DrC_00203

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00203
         (708 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SPU6|ACHB4_BOVIN  Neuronal acetylcholine receptor prote...    31   3.7  
sp|Q6LA06|MATK_TYPLA  Maturase K (Intron maturase)                 30   8.2  

>sp|Q8SPU6|ACHB4_BOVIN Neuronal acetylcholine receptor protein, beta-4 subunit precursor
          Length = 496

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -2

Query: 434 IRKFWSNYILIINVSRHKWNINVILIHNNRLWI*GVTWINNS 309
           +++ W++Y L  N SR++  +N++ I  NR+W+  +   NN+
Sbjct: 81  LKQEWTDYRLAWNSSRYE-GVNILRIPANRVWLPDIVLYNNA 121

>sp|Q6LA06|MATK_TYPLA Maturase K (Intron maturase)
          Length = 513

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -2

Query: 461 SNIIVRRWIIRKFWSNYILIINVSRHKWNINVILIHNN 348
           S+++V+R IIR +  NY  +IN + H  N N  L HNN
Sbjct: 58  SSVLVKRLIIRMYQQNY--LINSTNHS-NQNRFLGHNN 92

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,865,675
Number of Sequences: 369166
Number of extensions: 1343166
Number of successful extensions: 3222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3222
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00203

  1. Dr_sW_006_B01
  2. Dr_sW_022_H09