Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H09
(633 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SPU6|ACHB4_BOVIN Neuronal acetylcholine receptor prote... 31 3.0
sp|Q6LA06|MATK_TYPLA Maturase K (Intron maturase) 30 6.7
>sp|Q8SPU6|ACHB4_BOVIN Neuronal acetylcholine receptor protein, beta-4 subunit precursor
Length = 496
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -2
Query: 359 IRKFWSNYILIINVSRHKWNINVILIHNNRLWI*GVTWINNS 234
+++ W++Y L N SR++ +N++ I NR+W+ + NN+
Sbjct: 81 LKQEWTDYRLAWNSSRYE-GVNILRIPANRVWLPDIVLYNNA 121
>sp|Q6LA06|MATK_TYPLA Maturase K (Intron maturase)
Length = 513
Score = 29.6 bits (65), Expect = 6.7
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 386 SNIIVRRWIIRKFWSNYILIINVSRHKWNINVILIHNN 273
S+++V+R IIR + NY +IN + H N N L HNN
Sbjct: 58 SSVLVKRLIIRMYQQNY--LINSTNHS-NQNRFLGHNN 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,591,669
Number of Sequences: 369166
Number of extensions: 1132276
Number of successful extensions: 2727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2727
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)