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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00199
         (248 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0AAJ1|YNFG_ECOLI  Probable anaerobic dimethyl sulfoxide ...    30   1.3  
sp|Q83RZ7|DMSB_SHIFL  Anaerobic dimethyl sulfoxide reductase...    29   3.8  
sp|P18776|DMSB_ECOLI  Anaerobic dimethyl sulfoxide reductase...    29   3.8  
sp|Q8SXT3|HFW2_DROME  Singed wings protein 2 precursor             28   5.0  

>sp|P0AAJ1|YNFG_ECOLI Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO
           reductase iron-sulfur subunit ynfG)
 sp|P0AAJ2|YNFG_ECOL6 Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO
           reductase iron-sulfur subunit ynfG)
          Length = 205

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 26  NVHLYFLEVSCCFVDAGTCAKKCPS 100
           NV  Y+L +SC   D   C K CPS
Sbjct: 57  NVFAYYLSISCNHCDDPACTKVCPS 81

>sp|Q83RZ7|DMSB_SHIFL Anaerobic dimethyl sulfoxide reductase chain B (DMSO reductase
           iron-sulfur subunit)
          Length = 205

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 26  NVHLYFLEVSCCFVDAGTCAKKCPS 100
           NV  Y+L +SC   +   C K CPS
Sbjct: 57  NVFAYYLSISCNHCEDPACTKVCPS 81

>sp|P18776|DMSB_ECOLI Anaerobic dimethyl sulfoxide reductase chain B (DMSO reductase
           iron-sulfur subunit)
          Length = 205

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 26  NVHLYFLEVSCCFVDAGTCAKKCPS 100
           NV  Y+L +SC   +   C K CPS
Sbjct: 57  NVFAYYLSISCNHCEDPACTKVCPS 81

>sp|Q8SXT3|HFW2_DROME Singed wings protein 2 precursor
          Length = 499

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -1

Query: 149 NIFLIHSSSFRRI-PNPCLDISWHKFLHQQNNMILPKSKDERLID----NCDQN 3
           N+  I S +F+R+ P   LD+ W++ +     ++LP++ ++  +     NC +N
Sbjct: 164 NLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPRNFEQLYLAGNPWNCTRN 217

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,222,969
Number of Sequences: 369166
Number of extensions: 286133
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_005_P21
2. Dr_sW_007_F20