Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F20
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SXT3|HFW2_DROME Singed wings protein 2 precursor 29 3.9
sp|P0AAJ1|YNFG_ECOLI Probable anaerobic dimethyl sulfoxide ... 28 6.6
>sp|Q8SXT3|HFW2_DROME Singed wings protein 2 precursor
Length = 499
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 145 NIFLIHSSSFRRI-PNPCLDISWHKFLHQQNNMILPKSKDEL 23
N+ I S +F+R+ P LD+ W++ + ++LP++ ++L
Sbjct: 164 NLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPRNFEQL 205
>sp|P0AAJ1|YNFG_ECOLI Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO
reductase iron-sulfur subunit ynfG)
sp|P0AAJ2|YNFG_ECOL6 Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO
reductase iron-sulfur subunit ynfG)
Length = 205
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 25 VHLYFLEVSCCFVDAGTCAKKCPS 96
V Y+L +SC D C K CPS
Sbjct: 58 VFAYYLSISCNHCDDPACTKVCPS 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,980,244
Number of Sequences: 369166
Number of extensions: 267490
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)