Planaria EST Database

DrC_00164

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00164
         (731 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61043|NIN_MOUSE  Ninein                                        45   2e-04
sp|Q02224|CENPE_HUMAN  Centromeric protein E (CENP-E protein)      43   8e-04
sp|P62135|RAD50_NANEQ  DNA double-strand break repair rad50 ...    42   0.001
sp|P34549|YNJ5_CAEEL  Hypothetical protein R10E11.5 in chrom...    42   0.001
sp|P38748|YHB0_YEAST  Hypothetical 67.5 kDa protein in PRPS4...    42   0.002
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    42   0.002
sp|P40457|MLP2_YEAST  Protein MLP2 (Myosin-like protein 2)         41   0.003
sp|P08106|HSP70_CHICK  Heat shock 70 kDa protein (HSP70)           41   0.003
sp|Q91VW5|GOGA4_MOUSE  Golgin subfamily A member 4 (tGolgin-1)     41   0.004
sp|Q00799|RBP2_PLAVB  Reticulocyte binding protein 2 precurs...    40   0.005

>sp|Q61043|NIN_MOUSE Ninein
          Length = 2035

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/164 (20%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
 Frame = +1

Query: 43  VEKDDSIIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQK 222
           +E+ D ++   E  +   D+ ++ +  ++  +++      RR    +++++ E  + I  
Sbjct: 373 LERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAA 432

Query: 223 FKNDILQEKDQSLESNYKDLIEALQK-YKSKIKENCDETQQRLKRKIDNLID-QIIQDPN 396
            KN++ QE++Q L+   K  +E  Q+  K+K +EN    +  L  K +N ++ +++++  
Sbjct: 433 LKNELRQEREQMLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELLENAE 492

Query: 397 KL-NTDMVTSKLEECNKIIIGILQDAWAKQYKELANFLKSQDKL 525
           KL   + +T KL+   + +  +L + +       A F   +++L
Sbjct: 493 KLAEYESLTQKLQ---RSLENVLAEKFGDLDPSSAEFFLQEERL 533

>sp|Q02224|CENPE_HUMAN Centromeric protein E (CENP-E protein)
          Length = 2663

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
 Frame = +1

Query: 46   EKDDSIIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQKF 225
            E++++I +   N  +++ E    +  L   I +  +N+ +    + +Q+N + + E+Q+ 
Sbjct: 1488 EQEETINELRVNLSEKETEISTIQKQLEA-INDKLQNKIQEIYEKEEQLNIKQISEVQEN 1546

Query: 226  KNDILQEKD---------QSLESNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQ 378
             N++ Q K+         QS+ES   +L   LQ+ + +I+    E ++ +KR  + L  Q
Sbjct: 1547 VNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE-KEEMKRVQEAL--Q 1603

Query: 379  IIQDPNKLNTDMVTSKLEE 435
            I +D  K NT  + +K++E
Sbjct: 1604 IERDQLKENTKEIVAKMKE 1622


 Score = 39.3 bits (90), Expect = 0.011
 Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 39/251 (15%)
 Frame = +1

Query: 55   DSIIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEIL---KEIQKF 225
            D +  T  N K    EF  F     K +    E + +    E +++N EI+   KE QKF
Sbjct: 803  DDLATTQSNYKSTDQEFQNF-----KTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKF 857

Query: 226  KNDI-------------LQEKDQSLESNYKDL-------------IEALQKYKSKIKENC 327
             + +             LQEK + ++    ++             ++ +++ K+ I E  
Sbjct: 858  DSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSPLQTVEREKTLITEKL 917

Query: 328  DETQQRLKRKIDNLID-QIIQDPNKLNTDMVTSKLEECNKIIIGI---LQDAWA--KQYK 489
             +T + +K       D + +Q+  ++  D + S + +   + I     L++A    KQ++
Sbjct: 918  QQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQ 977

Query: 490  ELANFLKSQDKLRNSNSLH--QNTRPTIMKMWNPT--IIKPSDVPSGESNSVVAIIEKIP 657
            E  N LKS+     S +LH  +NT  T  +       I K  D+ +  + ++ A ++   
Sbjct: 978  ETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNE 1037

Query: 658  ILPVPNPMFQL 690
            I+     +F L
Sbjct: 1038 IIEQQRKIFSL 1048


 Score = 38.9 bits (89), Expect = 0.014
 Identities = 34/154 (22%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
 Frame = +1

Query: 46   EKDDSIIDTNENAKKRQDEFDRFEYNLS-KYIENPKENRSRRYRNEIQQINAEILKEIQK 222
            EK+D I    E    ++ E  + + + S + IE+PK+ +   +  E   ++A+      +
Sbjct: 586  EKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLR 645

Query: 223  FKNDILQEKDQSLESNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQIIQDPNKL 402
             +N  L+EK + L + YK +   +Q Y+S++     E +++++  ++  +     +  KL
Sbjct: 646  SENLELKEKMKELATTYKQMENDIQLYQSQL-----EAKKKMQVDLEKELQSAFNEITKL 700

Query: 403  NTDMVTSKLEE---CNKIIIGILQDAWAKQYKEL 495
             T ++  K+ +   CN  + G + D   +  KE+
Sbjct: 701  -TSLIDGKVPKDLLCNLELEGKITDLQKELNKEV 733


 Score = 30.0 bits (66), Expect = 6.6
 Identities = 21/125 (16%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
 Frame = +1

Query: 172  RNEIQQINAEILKEIQKFKNDILQEKDQSLESNYK-----DLIEALQKYKSKIKENCDET 336
            +NE+QQ+   ++ E ++ K D+ +  + ++E+  +     D ++  Q+  ++ K +  + 
Sbjct: 1052 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKK 1111

Query: 337  QQRLKRKIDNLIDQIIQDPNKLNTDMVTSKLEECNKIIIGILQDAWAKQYKELANFLKSQ 516
            +  L R  D L +  +++  K  +  +  K ++   +     Q+  ++  K++      +
Sbjct: 1112 EGELSRTCDRLAE--VEEKLKEKSQQLQEKQQQLLNV-----QEEMSEMQKKINEIENLK 1164

Query: 517  DKLRN 531
            ++L+N
Sbjct: 1165 NELKN 1169

>sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPase
          Length = 786

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
 Frame = +1

Query: 82  AKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQKFKNDILQEKD-QS 258
           +K +Q E  R EY  +K +E  KE   R Y   +++    + KEI + +N I Q K+ + 
Sbjct: 324 SKYKQYEEKRLEYEKAKMLEKEKEKAKREYSYLLKE-KESLEKEIAELQNKINQIKELEK 382

Query: 259 LESNYKDLIEALQKYKSKIK--ENCDETQQRLKRKI-DNLIDQIIQDPNKLNTDMVTSKL 429
           +E    ++ E +   K+K+K  EN  +       K+  + I+ + ++  KL  +    K 
Sbjct: 383 MEQELLEIQERIGVIKAKLKLLENIKDRCPLCGAKLSSDTIEHLQKEREKLQKEYYYLK- 441

Query: 430 EECNKIIIGILQDAWAKQYKELANFLKSQDK 522
           E+ N+++I I      ++YK L   L+++ K
Sbjct: 442 EKYNQLLIKIRA---LEKYKGLEKVLEAKTK 469


 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +1

Query: 157 RSRRYRNEIQQINAEILKEIQKFKNDILQEKDQSLESNYKDLIEALQKYK-----SKIKE 321
           R    +N ++++  EI K+  K K + L+     +ES YK   E   +Y+      K KE
Sbjct: 294 RCNEIKNRLKELEKEI-KDYDKIKKEFLE-----IESKYKQYEEKRLEYEKAKMLEKEKE 347

Query: 322 NCDETQQRLKRKIDNLIDQIIQDPNKLNTDMVTSKLEE 435
                   L ++ ++L  +I +  NK+N      K+E+
Sbjct: 348 KAKREYSYLLKEKESLEKEIAELQNKINQIKELEKMEQ 385


 Score = 29.6 bits (65), Expect = 8.6
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
 Frame = +1

Query: 124 LSKYIENPKENRSRRYRNEIQQINAEILKEIQKFKNDILQEKDQSLESNYKDLIEALQKY 303
           L K +E  K        N +++I   I  EI K       E D+S+   YK L+  +   
Sbjct: 460 LEKVLE-AKTKHLETIENRLKEIKPIIELEIPKI------ELDESIPYKYKQLLNKVSYL 512

Query: 304 KSKIKE-------NC--DETQQRLKRKIDNLIDQIIQDPNKLNTDMVTSKLEECNKI--- 447
           ++KIKE        C  D   + LKR  D     I +   +   +++  +LE  N +   
Sbjct: 513 EAKIKEYERYKNIECPYDIAIEELKRIEDKYNKYIKKPALERELNLLLKELERYNSLLKE 572

Query: 448 ---IIGILQDAWAKQYKEL 495
              I+  L      +YKEL
Sbjct: 573 KEEILSKLNPEIETKYKEL 591

>sp|P34549|YNJ5_CAEEL Hypothetical protein R10E11.5 in chromosome III
          Length = 529

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
 Frame = +1

Query: 199 EILKEIQKFKNDILQEKDQSLESNYKDLIEALQKYKSKIKENCDETQQRLK--------- 351
           ++L ++QK  +D + +   ++ ++   +  ALQK + ++ +  D+T + +K         
Sbjct: 360 DLLAKVQKVADDTIDKSKTTVAADVAKMSGALQKAEEEVVQTIDQTVKNIKSNVNEVKKD 419

Query: 352 ------RKIDNLIDQIIQDPNKL--NTDMVTSKLEECNKIIIGILQDAWAKQYKELANFL 507
                  K+D++  ++ +    L   TD + SK++  ++ I   L++A  K  K + + +
Sbjct: 420 VEKNIAEKVDDITKELEKSAKSLEETTDKIGSKIDNTSQAIKSNLEEASLKTEKSVNDAV 479

Query: 508 KSQDKL 525
           KS +KL
Sbjct: 480 KSGEKL 485

>sp|P38748|YHB0_YEAST Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic region
          Length = 585

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
 Frame = +1

Query: 67  DTNENAKKRQDEFDRFEY-NLSKYIENPKEN-----------RSRRYRNEIQQINAEILK 210
           D + N     DE     Y N SK  E    N           R R Y  E  Q+    L+
Sbjct: 378 DDDNNDIGNSDELQNVVYGNRSKNGEKSNSNKKDGELAANFLRHREYHLEYVQVLISQLE 437

Query: 211 EIQKFKNDILQEKDQ--SLESNYKDLIEALQKYKSKIKENCDETQQR---LKRKIDNLID 375
             +++    LQEKDQ  S  SN + L ++++  K + +    E Q+R    K K++   D
Sbjct: 438 SQREYYELKLQEKDQTASDSSNVESLKKSMEDLKLQFQVTQKEWQKREMAQKSKLEE--D 495

Query: 376 QIIQDPNKLNTDMVTSK---LEECNKIIIGILQDAWAKQYKELANFLKSQDKLRNSN 537
            ++ +  + N D ++ K   LE  NK +    QD   +Q K+L  +L SQ+K ++++
Sbjct: 496 MLVIEGLQANLDHLSKKQEQLERENKALEESKQDL-EEQVKDLMFYLDSQEKFKDAD 551

>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
 Frame = +1

Query: 79   NAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQKFKNDILQEKDQS 258
            N +  + E +     L KY E    N+ R+Y  EI Q+N EI    Q  +N+ +++K+  
Sbjct: 1146 NLESLEKEHEDLAAQLKKY-EEQIANKERQYNEEISQLNDEITSTQQ--ENESIKKKNDE 1202

Query: 259  LESNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQIIQDPNKLNTDMVTSKLE-- 432
            LE   K +            ++  E Q  LK+   + ++  I++  K N     S LE  
Sbjct: 1203 LEGEVKAM------------KSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESI 1250

Query: 433  ---ECNKIIIGILQDAWAKQYKELANFLKSQDKLRNS 534
               E   + I  LQD    + KE++     +DKL+ S
Sbjct: 1251 KSVESETVKIKELQDECNFKEKEVSEL---EDKLKAS 1284


 Score = 35.4 bits (80), Expect = 0.16
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
 Frame = +1

Query: 76   ENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAE-----------------I 204
            EN K  Q E D+   N  K  ++ KE+ + +   EI+ IN                   I
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKI-TEIKAINENLEEMKIQCNNLSKEKEHI 939

Query: 205  LKEIQKFKNDI---------LQEKDQSLESNYKDLIEALQKYKSKIKENCDETQQRLKRK 357
             KE+ ++K+           L EK +SL +NYKD+    +     ++E+ +E+  +L   
Sbjct: 940  SKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLS-N 998

Query: 358  IDNLIDQIIQDPN--KLNTDMVTSKLEECNKIIIGILQ 465
            + N ID + Q+    ++    +   +E+  K I  + Q
Sbjct: 999  LQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQ 1036


 Score = 35.0 bits (79), Expect = 0.21
 Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 65/240 (27%)
 Frame = +1

Query: 52   DDSIIDT---NENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQIN--------- 195
            +D I  T   NE+ KK+ DE +       K +++  E +S   ++EI  +N         
Sbjct: 1183 NDEITSTQQENESIKKKNDELE----GEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKK 1238

Query: 196  -----AEILKEIQKFKNDILQEKDQSLESNYK--------DLIEA----------LQKYK 306
                 A +L+ I+  +++ ++ K+   E N+K        D ++A          LQK  
Sbjct: 1239 NETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKES 1298

Query: 307  SKIKENCDETQQRLK---RKIDNLIDQIIQDPNKLNTDMVTSKLEECN--------KIII 453
             KIKE  D     LK    KI NL     +  ++L+    TS  E  N        K  I
Sbjct: 1299 EKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEI 1358

Query: 454  GILQDAWAK--------------QYKELANFLKSQ-DKLRNSNSLH----QNTRPTIMKM 576
             I   A+ K              +Y E  N L+ +  +L+N N L      NTR  + K+
Sbjct: 1359 QIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKV 1418

>sp|P40457|MLP2_YEAST Protein MLP2 (Myosin-like protein 2)
          Length = 1679

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 11/215 (5%)
 Frame = +1

Query: 22   YEMFQIRVEKDDSIIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAE 201
            Y      +E     +   + A    D F++ + N+ K  +   + R++ +  ++Q+    
Sbjct: 1358 YRTLMEEIESLKKELQIFKTANSSSDAFEKLKVNMEKEKDRIIDERTKEFEKKLQET--- 1414

Query: 202  ILKEIQKFKNDILQEKDQSLESNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQI 381
                           K  S E+ Y   IE L+K    +KE  DET +R+K   +NL  + 
Sbjct: 1415 -------------LNKSTSSEAEYSKDIETLKK--EWLKEYEDETLRRIKEAEENL-KKR 1458

Query: 382  IQDPNKLNTDMVTSKLEECNKIIIGILQDAWAKQYKELANFL----------KSQDKLRN 531
            I+ P++     + SK +E        L++ + K+ KE A  L           ++++L N
Sbjct: 1459 IRLPSEERIQKIISKRKE-------ELEEEFRKKLKENAGSLTFLDNKGSGEDAEEELWN 1511

Query: 532  SNSLHQNTRPT-IMKMWNPTIIKPSDVPSGESNSV 633
            S S   + RP+ +    N   +KP +      N V
Sbjct: 1512 SPSKGNSERPSAVAGFINQKNLKPQEQLKNVKNDV 1546


 Score = 31.6 bits (70), Expect = 2.3
 Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
 Frame = +1

Query: 61   IIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQKFKNDIL 240
            IID  ++  K   + +  + N +  ++   +N + + R   +Q+N +  +EI + + D++
Sbjct: 1159 IIDEFKDITKEVTQVNILKEN-NAILQKSLKNVTEKNREIYKQLN-DRQEEISRLQRDLI 1216

Query: 241  QEKDQ-SLESNYKDLIEA-LQKYKSKIKENCDETQQRLKRKIDNLIDQIIQDPNKLNT 408
            Q K+Q S+ SN   + E+ +++ K + ++   + +   K+ I+ L ++I     KL++
Sbjct: 1217 QTKEQVSINSNKILVYESEMEQCKQRYQDLSQQQKDAQKKDIEKLTNEISDLKGKLSS 1274

>sp|P08106|HSP70_CHICK Heat shock 70 kDa protein (HSP70)
          Length = 634

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +1

Query: 49  KDDSIIDTNENAKKRQDEFDRFEYNLSKYIENPKENRSR---RYRNEIQQINAEILKEIQ 219
           K++ I  TN+  +  +D+ DR      KY    + NR R   +   E    N +   E +
Sbjct: 500 KENKITITNDKGRLSKDDIDRMVQEAEKYKAEDEANRDRVGAKNSLESYTYNMKQTVEDE 559

Query: 220 KFKNDILQEKDQSLESNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQIIQ 387
           K K  I  +  Q +    +++I +L + +   KE  +  Q+ L++  + ++ ++ Q
Sbjct: 560 KLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLYQ 615

>sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 (tGolgin-1)
          Length = 2238

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 24/99 (24%), Positives = 51/99 (51%)
 Frame = +1

Query: 85   KKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEILKEIQKFKNDILQEKDQSLE 264
            ++ Q E D     L +  E   E + ++ + +++  +   LK++ +  N  L +K+Q LE
Sbjct: 1969 REHQQELDI----LKRECEQEAEEKLKQEQEDLELKHTSTLKQLMREFNTQLAQKEQELE 2024

Query: 265  SNYKDLIEALQKYKSKIKENCDETQQRLKRKIDNLIDQI 381
               ++ I+  Q+ ++++ E+  E  Q+L RKI    D +
Sbjct: 2025 RTVQETIDKAQEVEAELLESHQEETQQLHRKIAEKEDDL 2063

>sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precursor (PvRBP-2)
          Length = 2867

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
 Frame = +1

Query: 73   NENAKKRQDEFDRFEYNLSKYIENPKENRSRRYRNEIQQINAEI---LKEIQKFKNDILQ 243
            NE  KK++        N  ++ +  KE        E + +N  +   L+EI+  K  + +
Sbjct: 583  NEIKKKKKSNSSNSSTNSKEFTDKLKE-----LETEFEGLNKTVKGYLQEIEDIK--VKE 635

Query: 244  EKDQSLESNYKDLIEALQKYKSKIKENC-------DETQQRLKRKIDNLIDQIIQDPNKL 402
             +D+SL    K+ IE   KY S  ++N        DE Q+ ++ KI+ LI+      +K 
Sbjct: 636  NEDRSL----KNQIEQHLKYTSDNRDNVKTLISKNDEIQKYIE-KIEKLINDAPSGKDKF 690

Query: 403  NTDM------VTSKLEECNKIIIGILQDAWAKQYKELANFLKSQDKLRNSNSLHQNTRPT 564
             T+       V   ++E +K  + +L ++ +K Y+E          +     LHQ T+  
Sbjct: 691  TTEKTNLQNKVKKIIDEFHKEDLQLLLNSLSKFYEEHQKLYNEASTIEKIKDLHQKTKEE 750

Query: 565  IMKM 576
              K+
Sbjct: 751  YEKL 754

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,157,210
Number of Sequences: 369166
Number of extensions: 1194096
Number of successful extensions: 6010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5956
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

Cluster detail

DrC_00164

  1. Dr_sW_005_A12
  2. Dr_sW_027_D15