Planaria EST Database

DrC_00154

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00154
         (128 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94570|TBA2_HOMAM  Tubulin alpha-2 chain (Alpha-II tubulin)     74   1e-13
sp|P68368|TBA4_MOUSE  Tubulin alpha-4 chain (Alpha-tubulin 4...    73   2e-13
sp|Q91060|TBA_NOTVI  Tubulin alpha chain                           73   2e-13
sp|P09644|TBA5_CHICK  Tubulin alpha-5 chain                        73   2e-13
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                        73   2e-13
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain                73   2e-13
sp|Q9FT36|TBA_DAUCA  Tubulin alpha chain                           73   2e-13
sp|Q40831|TBA1_PELFA  Tubulin alpha-1 chain                        72   3e-13
sp|P52273|TBA_BOMMO  Tubulin alpha chain                           72   5e-13
sp|Q8WQ47|TBA_LEPDS  Tubulin alpha chain (Allergen Lep d ?)        72   5e-13

>sp|Q94570|TBA2_HOMAM Tubulin alpha-2 chain (Alpha-II tubulin)
          Length = 451

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECIS+HVGQAGVQMGNSCWELYCLEHGIQ +G
Sbjct: 1   MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDG 34

>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
           M-alpha-4)
 sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
           alpha-tubulin)
 sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
           alpha-tubulin) (Tubulin H2-alpha)
          Length = 448

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHVGQAGVQMGNACWELYCLEHGIQPDG 34

>sp|Q91060|TBA_NOTVI Tubulin alpha chain
          Length = 450

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHVGQAGVQMGNACWELYCLEHGIQPDG 34

>sp|P09644|TBA5_CHICK Tubulin alpha-5 chain
          Length = 448

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDG 34

>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECIS+HVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISIHVGQAGVQMGNACWELYCLEHGIQPDG 34

>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVH+GQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHIGQAGVQMGNACWELYCLEHGIQPDG 34

>sp|Q9FT36|TBA_DAUCA Tubulin alpha chain
          Length = 451

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 29/34 (85%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVH+GQAG+Q+GN+CWELYCLEHGIQ NG
Sbjct: 1   MRECISVHIGQAGIQIGNACWELYCLEHGIQPNG 34

>sp|Q40831|TBA1_PELFA Tubulin alpha-1 chain
          Length = 453

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 28/34 (82%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECIS+H+GQAG+Q+GN+CWELYCLEHGIQ NG
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPNG 34

>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVHVGQAGVQ+GN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 34

>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
          Length = 450

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 17  MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 118
           MRECISVHVGQAGVQ+GN+CWELYCLEHGIQ +G
Sbjct: 1   MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 34

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,000,529
Number of Sequences: 369166
Number of extensions: 219097
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 68,354,980
effective HSP length: 16
effective length of database: 65,399,220
effective search space used: 1700379720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00154

  1. Dr_sW_004_M11
  2. Dr_sW_028_C03