Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_C03
(126 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94570|TBA2_HOMAM Tubulin alpha-2 chain (Alpha-II tubulin) 74 1e-13
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 73 2e-13
sp|Q91060|TBA_NOTVI Tubulin alpha chain 73 2e-13
sp|P09644|TBA5_CHICK Tubulin alpha-5 chain 73 2e-13
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 73 2e-13
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 73 2e-13
sp|Q9FT36|TBA_DAUCA Tubulin alpha chain 73 2e-13
sp|Q40831|TBA1_PELFA Tubulin alpha-1 chain 72 3e-13
sp|P52273|TBA_BOMMO Tubulin alpha chain 72 5e-13
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 72 5e-13
>sp|Q94570|TBA2_HOMAM Tubulin alpha-2 chain (Alpha-II tubulin)
Length = 451
Score = 73.9 bits (180), Expect = 1e-13
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECIS+HVGQAGVQMGNSCWELYCLEHGIQ +G
Sbjct: 1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDG 34
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 73.2 bits (178), Expect = 2e-13
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDG 34
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 73.2 bits (178), Expect = 2e-13
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDG 34
>sp|P09644|TBA5_CHICK Tubulin alpha-5 chain
Length = 448
Score = 73.2 bits (178), Expect = 2e-13
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVHVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDG 34
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 72.8 bits (177), Expect = 2e-13
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECIS+HVGQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDG 34
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 72.8 bits (177), Expect = 2e-13
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVH+GQAGVQMGN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDG 34
>sp|Q9FT36|TBA_DAUCA Tubulin alpha chain
Length = 451
Score = 72.8 bits (177), Expect = 2e-13
Identities = 29/34 (85%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVH+GQAG+Q+GN+CWELYCLEHGIQ NG
Sbjct: 1 MRECISVHIGQAGIQIGNACWELYCLEHGIQPNG 34
>sp|Q40831|TBA1_PELFA Tubulin alpha-1 chain
Length = 453
Score = 72.4 bits (176), Expect = 3e-13
Identities = 28/34 (82%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECIS+H+GQAG+Q+GN+CWELYCLEHGIQ NG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPNG 34
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 71.6 bits (174), Expect = 5e-13
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVHVGQAGVQ+GN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 34
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 71.6 bits (174), Expect = 5e-13
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +3
Query: 15 MRECISVHVGQAGVQMGNSCWELYCLEHGIQNNG 116
MRECISVHVGQAGVQ+GN+CWELYCLEHGIQ +G
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 34
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,356,282
Number of Sequences: 369166
Number of extensions: 200116
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 68,354,980
effective HSP length: 15
effective length of database: 65,583,955
effective search space used: 1705182830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)