Planaria EST Database

DrC_00123

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00123
         (873 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JJK5|HERPU_MOUSE  Homocysteine-responsive endoplasmic r...    61   5e-09
sp|Q15011|HERPU_HUMAN  Homocysteine-responsive endoplasmic r...    59   2e-08
sp|P54727|RD23B_HUMAN  UV excision repair protein RAD23 homo...    35   0.36 
sp|P54728|RD23B_MOUSE  UV excision repair protein RAD23 homo...    35   0.36 
sp|Q89181|VA51_VACCA  Protein A51                                  34   0.46 
sp|Q8BLR2|CPNE4_MOUSE  Copine-4 (Copine IV)                        33   1.0  
sp|P54726|RD23A_MOUSE  UV excision repair protein RAD23 homo...    33   1.0  
sp|P34228|SEF1_YEAST  Suppressor protein SEF1                      32   1.8  
sp|P54725|RD23A_HUMAN  UV excision repair protein RAD23 homo...    32   2.3  
sp|P59209|RECX_STRA3  Regulatory protein recX                      32   2.3  

>sp|Q9JJK5|HERPU_MOUSE Homocysteine-responsive endoplasmic reticulum-resident
           ubiquitin-like domain member 1 protein
          Length = 391

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
 Frame = +3

Query: 3   KSPTDRIAPFTIKCNILWTIKQLKEHIKNVYPLKPTVESQKVIYVGKLLKDDQILKNLF- 179
           KSP  R     +  +  W++ +LK H+  VYP +P  E Q++IY GKLL D Q L++L  
Sbjct: 15  KSPNQRHRDLELSGDRSWSVSRLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLQDLLP 74

Query: 180 EPESSTIVHFICQSSINENEKKVDDVSKKPEITEEKRPDLYKEYQN 317
           + E   ++H +C  ++    K  +  +K  E TE+  PD   + Q+
Sbjct: 75  KQEKRHVLHLVC--NVKNPSKMPETSTKGAESTEQ--PDNSNQTQH 116

>sp|Q15011|HERPU_HUMAN Homocysteine-responsive endoplasmic reticulum-resident
           ubiquitin-like domain member 1 protein (Methyl
           methanesulfonate (MMF)-inducible fragment protein 1)
          Length = 391

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +3

Query: 3   KSPTDRIAPFTIKCNILWTIKQLKEHIKNVYPLKPTVESQKVIYVGKLLKDDQILKNLF- 179
           KSP  R     +  +  W++  LK H+  VYP +P  E Q++IY GKLL D Q L++L  
Sbjct: 15  KSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLP 74

Query: 180 EPESSTIVHFICQSSINENEKKVDDVSKKPEITEE 284
           + E   ++H +C  ++    K  +  +K  E TEE
Sbjct: 75  KQEKRHVLHLVC--NVKSPSKMPEINAKVAESTEE 107

>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B (hHR23B) (XP-C repair
           complementing complex 58 kDa protein) (p58)
          Length = 409

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 57  TIKQLKEHI-----KNVYPLKPTVESQKVIYVGKLLKDDQILKNLFEPESSTIV 203
           T+K LKE I     K+ +P    V  QK+IY GK+L DD  LK     E + +V
Sbjct: 22  TVKALKEKIESEKGKDAFP----VAGQKLIYAGKILNDDTALKEYKIDEKNFVV 71

>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B (mHR23B) (XP-C repair
           complementing complex 58 kDa protein) (p58)
          Length = 416

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 57  TIKQLKEHI-----KNVYPLKPTVESQKVIYVGKLLKDDQILKNLFEPESSTIV 203
           T+K LKE I     K+ +P    V  QK+IY GK+L DD  LK     E + +V
Sbjct: 22  TVKALKEKIESEKGKDAFP----VAGQKLIYAGKILSDDTALKEYKIDEKNFVV 71

>sp|Q89181|VA51_VACCA Protein A51
          Length = 310

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +3

Query: 78  HIKNVYPLKPTVESQKVIYVGKLLKDDQILKNLFEPESSTIVHFICQSSINENEK----- 242
           HIKN + +KP  E  K +++G   K++ ++ +L  P     V  +C S   +N       
Sbjct: 21  HIKNDFMIKPCCEKVKNVHIGGQSKNNTVIADL--PYMDNAVSDVCNSLYKKNVSRISRF 78

Query: 243 ----KVDDVSKKP 269
               K+DD  K P
Sbjct: 79  ANLIKIDDDDKTP 91

>sp|Q8BLR2|CPNE4_MOUSE Copine-4 (Copine IV)
          Length = 557

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -2

Query: 809 IHPKEKEKQHQSCHNARYAAVIIANQQQQSKSHQNIEIMQNISRFDLSIILIFSSVSHQP 630
           I+PK K K+     N + + ++I NQ +  K H  ++ +    +   ++ + F++ +  P
Sbjct: 266 INPKYKAKKK----NYKNSGMVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDP 321

Query: 629 SKCCSHHVLH 600
              CS H +H
Sbjct: 322 RNSCSLHYIH 331

>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A (mHR23A)
          Length = 363

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +3

Query: 57  TIKQLKEHI-----KNVYPLKPTVESQKVIYVGKLLKDDQILKNLFEPESSTIVHFICQS 221
           T+K LKE I     ++ +P    V  QK+IY GK+L DD  +++    E + +V  + ++
Sbjct: 24  TVKVLKEKIEAEKGRDAFP----VAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKA 79

Query: 222 SINENEKKVDDVSKKPEITEEKRPD 296
              +       +S  PE +    P+
Sbjct: 80  KAGQG------ISAPPEASPTAVPE 98

>sp|P34228|SEF1_YEAST Suppressor protein SEF1
          Length = 1057

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 734 QQQQSKSHQNIEIMQNISRFDLSIILIFSSVSHQPSKCCSHHVLHSILCWRSINSP 567
           +QQQ + HQ     Q IS  D S       ++H+P   C+H   H I C  S N P
Sbjct: 24  EQQQLQQHQFPSKKQRISHHDDS-----HQINHRPVTSCTHCRQHKIKCDASQNFP 74

>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A (hHR23A)
          Length = 363

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 57  TIKQLKEHI-----KNVYPLKPTVESQKVIYVGKLLKDDQILKNLFEPESSTIVHFICQS 221
           T+K LKE I     ++ +P    V  QK+IY GK+L DD  +++    E + +V  + ++
Sbjct: 24  TVKVLKEKIEAEKGRDAFP----VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 79

Query: 222 SINENEKKVDDVSKKPEITEEKRPD 296
              +        S  PE +    P+
Sbjct: 80  KAGQG------TSAPPEASPTAAPE 98

>sp|P59209|RECX_STRA3 Regulatory protein recX
          Length = 258

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
 Frame = +3

Query: 111 VESQKVIYVGKLLKDDQILKNLFEPESSTIVHFICQSSINENEKKVDDVSKKPEITEEKR 290
           +E +K +Y  +L   +    NL+  E  TIVHF+    +  N +K++++ K  +++  K 
Sbjct: 6   IEKKKRLYTLELDNTE----NLYITED-TIVHFMLSKGMIVNAEKLENIKKFAQLSYGKN 60

Query: 291 PDLY---------KEYQNYVNNYYASTSQSFAAINHYQQMMWINHA-YMQSY 416
             LY         KE   Y+  +   +      I++ +   WIN   Y+QS+
Sbjct: 61  LGLYYISFKQRTEKEVIKYLQQHDIDSKIIPQIIDNLKSENWINDKNYVQSF 112

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,490,357
Number of Sequences: 369166
Number of extensions: 1386015
Number of successful extensions: 4804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4798
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00123

  1. Dr_sW_002_A02
  2. Dr_sW_004_C18